==749855== Memcheck, a memory error detector ==749855== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==749855== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==749855== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==749855== Parent PID: 748033 ==749855== ==749855== ==749855== FILE DESCRIPTORS: 9 open (3 std) at exit. ==749855== Open file descriptor 12: ==749855== at 0xE90926D: pipe (pipe.c:29) ==749855== by 0x18AE307D: ??? ==749855== by 0x140804CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==749855== by 0x105A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==749855== by 0x10541D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==749855== by 0xF238D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==749855== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==749855== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==749855== by 0x1327B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==749855== by 0x12D7D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==749855== by 0x12FF28: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==749855== by 0x12FE23: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==749855== by 0x130437: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==749855== by 0x12BFD5: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==749855== ==749855== Open file descriptor 8: /dev/shm/open_mpi.0000 ==749855== at 0xE90DC0C: __open_nocancel (open64_nocancel.c:39) ==749855== by 0xE891BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==749855== by 0xE49F822: ??? ==749855== by 0xE49F96F: ??? ==749855== by 0x141256DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==749855== by 0x14125938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==749855== by 0x140DB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==749855== by 0x140802DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==749855== by 0x105A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==749855== by 0x10541D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==749855== by 0xF238D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==749855== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==749855== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==749855== by 0x1327B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==749855== by 0x12D7D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==749855== by 0x12FF28: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==749855== by 0x12FE23: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==749855== by 0x130437: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==749855== by 0x12BFD5: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==749855== ==749855== Open file descriptor 115: ==749855== ==749855== ==749855== Open file descriptor 112: ==749855== ==749855== ==749855== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==749855== ==749855== ==749855== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==749855== ==749855== ==749855== ==749855== HEAP SUMMARY: ==749855== in use at exit: 857,959 bytes in 12,109 blocks ==749855== total heap usage: 6,674,340 allocs, 6,662,231 frees, 9,199,428,824 bytes allocated ==749855== ==749855== LEAK SUMMARY: ==749855== definitely lost: 0 bytes in 0 blocks ==749855== indirectly lost: 0 bytes in 0 blocks ==749855== possibly lost: 0 bytes in 0 blocks ==749855== still reachable: 56 bytes in 3 blocks ==749855== suppressed: 857,903 bytes in 12,106 blocks ==749855== Reachable blocks (those to which a pointer was found) are not shown. ==749855== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==749855== ==749855== For lists of detected and suppressed errors, rerun with: -s ==749855== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)