==349217== Memcheck, a memory error detector ==349217== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==349217== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==349217== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==349217== Parent PID: 347681 ==349217== ==349217== ==349217== FILE DESCRIPTORS: 10 open (3 std) at exit. ==349217== Open file descriptor 12: ==349217== at 0xE69C26D: pipe (pipe.c:29) ==349217== by 0x18A2107D: ??? ==349217== by 0x12FC64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349217== by 0xE2E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349217== by 0xE282D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349217== by 0xCF79D38: PetscInitialize (pinit.c:924) ==349217== by 0xCDE9153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==349217== by 0xCDE91A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==349217== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==349217== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==349217== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==349217== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==349217== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==349217== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==349217== ==349217== Open file descriptor 8: /dev/shm/open_mpi.0000 ==349217== at 0xE6A0C0C: __open_nocancel (open64_nocancel.c:39) ==349217== by 0xE624BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==349217== by 0xCE1D822: ??? ==349217== by 0xCE1D96F: ??? ==349217== by 0x1306B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==349217== by 0x1306B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==349217== by 0x13021922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==349217== by 0x12FC62DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349217== by 0xE2E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349217== by 0xE282D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349217== by 0xCF79D38: PetscInitialize (pinit.c:924) ==349217== by 0xCDE9153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==349217== by 0xCDE91A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==349217== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==349217== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==349217== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==349217== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==349217== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==349217== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==349217== ==349217== Open file descriptor 117: ==349217== ==349217== ==349217== Open file descriptor 114: ==349217== ==349217== ==349217== Open file descriptor 111: /etc/ssl/certs/ca-certificates.crt ==349217== ==349217== ==349217== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==349217== ==349217== ==349217== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==349217== ==349217== ==349217== ==349217== HEAP SUMMARY: ==349217== in use at exit: 995,548 bytes in 13,913 blocks ==349217== total heap usage: 178,234 allocs, 164,321 frees, 1,582,671,045 bytes allocated ==349217== ==349217== LEAK SUMMARY: ==349217== definitely lost: 0 bytes in 0 blocks ==349217== indirectly lost: 0 bytes in 0 blocks ==349217== possibly lost: 0 bytes in 0 blocks ==349217== still reachable: 24 bytes in 2 blocks ==349217== suppressed: 995,524 bytes in 13,911 blocks ==349217== Reachable blocks (those to which a pointer was found) are not shown. ==349217== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==349217== ==349217== For lists of detected and suppressed errors, rerun with: -s ==349217== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)