==363578== Memcheck, a memory error detector ==363578== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==363578== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==363578== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==363578== Parent PID: 347681 ==363578== ==363578== ==363578== FILE DESCRIPTORS: 10 open (3 std) at exit. ==363578== Open file descriptor 12: ==363578== at 0x1192726D: pipe (pipe.c:29) ==363578== by 0x1A6E107D: ??? ==363578== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==363578== by 0x1122F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363578== by 0x111C8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363578== by 0xFEBFD38: PetscInitialize (pinit.c:924) ==363578== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==363578== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==363578== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==363578== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==363578== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==363578== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==363578== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==363578== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==363578== ==363578== Open file descriptor 8: /dev/shm/open_mpi.0000 ==363578== at 0x1192BC0C: __open_nocancel (open64_nocancel.c:39) ==363578== by 0x118AFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==363578== by 0xFD63822: ??? ==363578== by 0xFD6396F: ??? ==363578== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==363578== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==363578== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==363578== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==363578== by 0x1122F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363578== by 0x111C8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363578== by 0xFEBFD38: PetscInitialize (pinit.c:924) ==363578== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==363578== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==363578== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==363578== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==363578== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==363578== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==363578== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==363578== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==363578== ==363578== Open file descriptor 117: ==363578== ==363578== ==363578== Open file descriptor 114: ==363578== ==363578== ==363578== Open file descriptor 111: /etc/ssl/certs/ca-certificates.crt ==363578== ==363578== ==363578== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==363578== ==363578== ==363578== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==363578== ==363578== ==363578== ==363578== HEAP SUMMARY: ==363578== in use at exit: 995,540 bytes in 13,910 blocks ==363578== total heap usage: 3,725,534 allocs, 3,711,624 frees, 1,853,740,999 bytes allocated ==363578== ==363578== LEAK SUMMARY: ==363578== definitely lost: 0 bytes in 0 blocks ==363578== indirectly lost: 0 bytes in 0 blocks ==363578== possibly lost: 0 bytes in 0 blocks ==363578== still reachable: 56 bytes in 3 blocks ==363578== suppressed: 995,484 bytes in 13,907 blocks ==363578== Reachable blocks (those to which a pointer was found) are not shown. ==363578== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==363578== ==363578== For lists of detected and suppressed errors, rerun with: -s ==363578== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)