==347920== Memcheck, a memory error detector ==347920== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==347920== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==347920== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info ==347920== Parent PID: 347681 ==347920== ==347920== ==347920== FILE DESCRIPTORS: 10 open (3 std) at exit. ==347920== Open file descriptor 12: ==347920== at 0x645C26D: pipe (pipe.c:29) ==347920== by 0xAF1807D: ??? ==347920== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==347920== by 0x6656418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==347920== by 0x65EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==347920== by 0x4A95D38: PetscInitialize (pinit.c:924) ==347920== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==347920== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==347920== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==347920== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==347920== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==347920== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==347920== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==347920== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==347920== ==347920== Open file descriptor 8: /dev/shm/open_mpi.0000 ==347920== at 0x6460C0C: __open_nocancel (open64_nocancel.c:39) ==347920== by 0x63E4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==347920== by 0x5D1F822: ??? ==347920== by 0x5D1F96F: ??? ==347920== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==347920== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==347920== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==347920== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==347920== by 0x6656418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==347920== by 0x65EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==347920== by 0x4A95D38: PetscInitialize (pinit.c:924) ==347920== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==347920== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==347920== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==347920== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==347920== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==347920== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==347920== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==347920== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==347920== ==347920== Open file descriptor 117: ==347920== ==347920== ==347920== Open file descriptor 114: ==347920== ==347920== ==347920== Open file descriptor 111: /etc/ssl/certs/ca-certificates.crt ==347920== ==347920== ==347920== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt ==347920== ==347920== ==347920== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==347920== ==347920== ==347920== ==347920== HEAP SUMMARY: ==347920== in use at exit: 995,564 bytes in 13,923 blocks ==347920== total heap usage: 71,199 allocs, 57,276 frees, 1,581,861,751 bytes allocated ==347920== ==347920== LEAK SUMMARY: ==347920== definitely lost: 0 bytes in 0 blocks ==347920== indirectly lost: 0 bytes in 0 blocks ==347920== possibly lost: 0 bytes in 0 blocks ==347920== still reachable: 24 bytes in 2 blocks ==347920== suppressed: 995,540 bytes in 13,921 blocks ==347920== Reachable blocks (those to which a pointer was found) are not shown. ==347920== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==347920== ==347920== For lists of detected and suppressed errors, rerun with: -s ==347920== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 41 from 35)