==363769== Memcheck, a memory error detector ==363769== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==363769== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==363769== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==363769== Parent PID: 347681 ==363769== ==363769== ==363769== FILE DESCRIPTORS: 10 open (3 std) at exit. ==363769== Open file descriptor 12: ==363769== at 0x118E526D: pipe (pipe.c:29) ==363769== by 0x1A6E107D: ??? ==363769== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==363769== by 0x111ED418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363769== by 0x11186D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363769== by 0xFE57D38: PetscInitialize (pinit.c:924) ==363769== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==363769== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==363769== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==363769== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==363769== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==363769== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==363769== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==363769== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==363769== ==363769== Open file descriptor 8: /dev/shm/open_mpi.0000 ==363769== at 0x118E9C0C: __open_nocancel (open64_nocancel.c:39) ==363769== by 0x1186DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==363769== by 0x110E1822: ??? ==363769== by 0x110E196F: ??? ==363769== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==363769== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==363769== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==363769== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==363769== by 0x111ED418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363769== by 0x11186D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363769== by 0xFE57D38: PetscInitialize (pinit.c:924) ==363769== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==363769== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==363769== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==363769== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==363769== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==363769== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==363769== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==363769== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==363769== ==363769== Open file descriptor 117: ==363769== ==363769== ==363769== Open file descriptor 114: ==363769== ==363769== ==363769== Open file descriptor 111: /etc/ssl/certs/ca-certificates.crt ==363769== ==363769== ==363769== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==363769== ==363769== ==363769== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==363769== ==363769== ==363769== ==363769== HEAP SUMMARY: ==363769== in use at exit: 995,540 bytes in 13,910 blocks ==363769== total heap usage: 16,198,063 allocs, 16,184,153 frees, 3,062,939,817 bytes allocated ==363769== ==363769== LEAK SUMMARY: ==363769== definitely lost: 0 bytes in 0 blocks ==363769== indirectly lost: 0 bytes in 0 blocks ==363769== possibly lost: 0 bytes in 0 blocks ==363769== still reachable: 56 bytes in 3 blocks ==363769== suppressed: 995,484 bytes in 13,907 blocks ==363769== Reachable blocks (those to which a pointer was found) are not shown. ==363769== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==363769== ==363769== For lists of detected and suppressed errors, rerun with: -s ==363769== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)