==363203== Memcheck, a memory error detector ==363203== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==363203== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==363203== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningMeshBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==363203== Parent PID: 347681 ==363203== ==363203== ==363203== FILE DESCRIPTORS: 10 open (3 std) at exit. ==363203== Open file descriptor 12: ==363203== at 0x1002526D: pipe (pipe.c:29) ==363203== by 0x18A2007D: ??? ==363203== by 0x13F8B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==363203== by 0xF92D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363203== by 0xF8C6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363203== by 0xE597D38: PetscInitialize (pinit.c:924) ==363203== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==363203== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==363203== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==363203== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==363203== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==363203== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==363203== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==363203== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==363203== ==363203== Open file descriptor 8: /dev/shm/open_mpi.0000 ==363203== at 0x10029C0C: __open_nocancel (open64_nocancel.c:39) ==363203== by 0xFFADBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==363203== by 0xF821822: ??? ==363203== by 0xF82196F: ??? ==363203== by 0x140306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==363203== by 0x14030938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==363203== by 0x13FE6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==363203== by 0x13F8B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==363203== by 0xF92D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363203== by 0xF8C6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363203== by 0xE597D38: PetscInitialize (pinit.c:924) ==363203== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==363203== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==363203== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==363203== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==363203== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==363203== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==363203== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==363203== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==363203== ==363203== Open file descriptor 117: ==363203== ==363203== ==363203== Open file descriptor 114: ==363203== ==363203== ==363203== Open file descriptor 111: /etc/ssl/certs/ca-certificates.crt ==363203== ==363203== ==363203== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedSimulationsTutorial_valgrind.txt ==363203== ==363203== ==363203== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==363203== ==363203== ==363203== ==363203== HEAP SUMMARY: ==363203== in use at exit: 995,524 bytes in 13,910 blocks ==363203== total heap usage: 3,346,835 allocs, 3,332,925 frees, 2,499,700,986 bytes allocated ==363203== ==363203== LEAK SUMMARY: ==363203== definitely lost: 0 bytes in 0 blocks ==363203== indirectly lost: 0 bytes in 0 blocks ==363203== possibly lost: 0 bytes in 0 blocks ==363203== still reachable: 56 bytes in 3 blocks ==363203== suppressed: 995,468 bytes in 13,907 blocks ==363203== Reachable blocks (those to which a pointer was found) are not shown. ==363203== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==363203== ==363203== For lists of detected and suppressed errors, rerun with: -s ==363203== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)