==363297== Memcheck, a memory error detector ==363297== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==363297== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==363297== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==363297== Parent PID: 347681 ==363297== ==363297== ==363297== FILE DESCRIPTORS: 10 open (3 std) at exit. ==363297== Open file descriptor 12: ==363297== at 0x1010C26D: pipe (pipe.c:29) ==363297== by 0x18A2007D: ??? ==363297== by 0x13F8B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==363297== by 0xF92D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363297== by 0xF8C6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363297== by 0xE597D38: PetscInitialize (pinit.c:924) ==363297== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==363297== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==363297== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==363297== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==363297== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==363297== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==363297== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==363297== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==363297== ==363297== Open file descriptor 8: /dev/shm/open_mpi.0000 ==363297== at 0x10110C0C: __open_nocancel (open64_nocancel.c:39) ==363297== by 0x10094BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==363297== by 0xF821822: ??? ==363297== by 0xF82196F: ??? ==363297== by 0x140306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==363297== by 0x14030938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==363297== by 0x13FE6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==363297== by 0x13F8B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==363297== by 0xF92D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363297== by 0xF8C6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363297== by 0xE597D38: PetscInitialize (pinit.c:924) ==363297== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==363297== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==363297== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==363297== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==363297== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==363297== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==363297== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==363297== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==363297== ==363297== Open file descriptor 117: ==363297== ==363297== ==363297== Open file descriptor 114: ==363297== ==363297== ==363297== Open file descriptor 111: /etc/ssl/certs/ca-certificates.crt ==363297== ==363297== ==363297== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==363297== ==363297== ==363297== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==363297== ==363297== ==363297== ==363297== HEAP SUMMARY: ==363297== in use at exit: 995,524 bytes in 13,910 blocks ==363297== total heap usage: 1,410,932 allocs, 1,397,022 frees, 1,631,491,504 bytes allocated ==363297== ==363297== LEAK SUMMARY: ==363297== definitely lost: 0 bytes in 0 blocks ==363297== indirectly lost: 0 bytes in 0 blocks ==363297== possibly lost: 0 bytes in 0 blocks ==363297== still reachable: 56 bytes in 3 blocks ==363297== suppressed: 995,468 bytes in 13,907 blocks ==363297== Reachable blocks (those to which a pointer was found) are not shown. ==363297== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==363297== ==363297== For lists of detected and suppressed errors, rerun with: -s ==363297== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)