==776489== Memcheck, a memory error detector ==776489== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==776489== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==776489== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==776489== Parent PID: 773799 ==776489== ==776489== ==776489== FILE DESCRIPTORS: 9 open (3 std) at exit. ==776489== Open file descriptor 12: ==776489== at 0xECA526D: pipe (pipe.c:29) ==776489== by 0x18AE107D: ??? ==776489== by 0x140844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==776489== by 0x105A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==776489== by 0x10541D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==776489== by 0xF236D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==776489== by 0xE807153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==776489== by 0xE8071A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==776489== by 0x13578E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==776489== by 0x130383: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==776489== by 0x132FA4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==776489== by 0x132E44: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==776489== by 0x1334DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==776489== by 0x12E775: main (TestOnLatticeSimulationWithPdes.cpp:19) ==776489== ==776489== Open file descriptor 8: /dev/shm/open_mpi.0000 ==776489== at 0xECA9C0C: __open_nocancel (open64_nocancel.c:39) ==776489== by 0xEC2DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==776489== by 0xE83B822: ??? ==776489== by 0xE83B96F: ??? ==776489== by 0x141296DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==776489== by 0x14129938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==776489== by 0x140DF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==776489== by 0x140842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==776489== by 0x105A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==776489== by 0x10541D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==776489== by 0xF236D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==776489== by 0xE807153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==776489== by 0xE8071A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==776489== by 0x13578E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==776489== by 0x130383: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==776489== by 0x132FA4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==776489== by 0x132E44: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==776489== by 0x1334DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==776489== by 0x12E775: main (TestOnLatticeSimulationWithPdes.cpp:19) ==776489== ==776489== Open file descriptor 115: ==776489== ==776489== ==776489== Open file descriptor 112: ==776489== ==776489== ==776489== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt ==776489== ==776489== ==776489== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==776489== ==776489== ==776489== ==776489== HEAP SUMMARY: ==776489== in use at exit: 857,959 bytes in 12,109 blocks ==776489== total heap usage: 1,909,098 allocs, 1,896,989 frees, 1,961,368,206 bytes allocated ==776489== ==776489== LEAK SUMMARY: ==776489== definitely lost: 0 bytes in 0 blocks ==776489== indirectly lost: 0 bytes in 0 blocks ==776489== possibly lost: 0 bytes in 0 blocks ==776489== still reachable: 56 bytes in 3 blocks ==776489== suppressed: 857,903 bytes in 12,106 blocks ==776489== Reachable blocks (those to which a pointer was found) are not shown. ==776489== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==776489== ==776489== For lists of detected and suppressed errors, rerun with: -s ==776489== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)