==782743== Memcheck, a memory error detector ==782743== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==782743== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==782743== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexBasedCellPopulationForCrypt -malloc_debug -malloc_dump -memory_info ==782743== Parent PID: 773799 ==782743== ==782743== ==782743== FILE DESCRIPTORS: 9 open (3 std) at exit. ==782743== Open file descriptor 12: ==782743== at 0x1159826D: pipe (pipe.c:29) ==782743== by 0x1A7A207D: ??? ==782743== by 0x158F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==782743== by 0x111E5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==782743== by 0x1117ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==782743== by 0xFE52D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==782743== by 0xFD2A153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==782743== by 0xFD2A1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==782743== by 0x11D8AF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==782743== by 0x1190F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==782743== by 0x11B488: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==782743== by 0x11B383: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==782743== by 0x11B997: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==782743== by 0x1178F5: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==782743== ==782743== Open file descriptor 8: /dev/shm/open_mpi.0000 ==782743== at 0x1159CC0C: __open_nocancel (open64_nocancel.c:39) ==782743== by 0x11520BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==782743== by 0x110DC822: ??? ==782743== by 0x110DC96F: ??? ==782743== by 0x159986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==782743== by 0x15998938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==782743== by 0x1594E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==782743== by 0x158F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==782743== by 0x111E5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==782743== by 0x1117ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==782743== by 0xFE52D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==782743== by 0xFD2A153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==782743== by 0xFD2A1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==782743== by 0x11D8AF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==782743== by 0x1190F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==782743== by 0x11B488: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==782743== by 0x11B383: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==782743== by 0x11B997: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==782743== by 0x1178F5: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==782743== ==782743== Open file descriptor 115: ==782743== ==782743== ==782743== Open file descriptor 112: ==782743== ==782743== ==782743== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulationForCrypt_valgrind.txt ==782743== ==782743== ==782743== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==782743== ==782743== ==782743== ==782743== HEAP SUMMARY: ==782743== in use at exit: 858,115 bytes in 12,114 blocks ==782743== total heap usage: 62,006 allocs, 49,892 frees, 1,543,381,503 bytes allocated ==782743== ==782743== LEAK SUMMARY: ==782743== definitely lost: 0 bytes in 0 blocks ==782743== indirectly lost: 0 bytes in 0 blocks ==782743== possibly lost: 0 bytes in 0 blocks ==782743== still reachable: 136 bytes in 4 blocks ==782743== suppressed: 857,979 bytes in 12,110 blocks ==782743== Reachable blocks (those to which a pointer was found) are not shown. ==782743== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==782743== ==782743== For lists of detected and suppressed errors, rerun with: -s ==782743== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)