==678569== Memcheck, a memory error detector ==678569== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==678569== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==678569== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==678569== Parent PID: 676588 ==678569== ==678569== ==678569== FILE DESCRIPTORS: 9 open (3 std) at exit. ==678569== Open file descriptor 12: ==678569== at 0xEC5D26D: pipe (pipe.c:29) ==678569== by 0x18A1E07D: ??? ==678569== by 0x1402F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==678569== by 0x108FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==678569== by 0x10896D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==678569== by 0xF58DD38: PetscInitialize (pinit.c:924) ==678569== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==678569== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==678569== by 0x13285A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==678569== by 0x12D813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==678569== by 0x12FFCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==678569== by 0x12FEC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==678569== by 0x1304DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==678569== by 0x12C015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==678569== ==678569== Open file descriptor 8: /dev/shm/open_mpi.0000 ==678569== at 0xEC61C0C: __open_nocancel (open64_nocancel.c:39) ==678569== by 0xEBE5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==678569== by 0xE4A9822: ??? ==678569== by 0xE4A996F: ??? ==678569== by 0x140D46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==678569== by 0x140D4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==678569== by 0x1408A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==678569== by 0x1402F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==678569== by 0x108FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==678569== by 0x10896D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==678569== by 0xF58DD38: PetscInitialize (pinit.c:924) ==678569== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==678569== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==678569== by 0x13285A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==678569== by 0x12D813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==678569== by 0x12FFCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==678569== by 0x12FEC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==678569== by 0x1304DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==678569== by 0x12C015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==678569== ==678569== Open file descriptor 116: ==678569== ==678569== ==678569== Open file descriptor 112: ==678569== ==678569== ==678569== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==678569== ==678569== ==678569== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==678569== ==678569== ==678569== ==678569== HEAP SUMMARY: ==678569== in use at exit: 835,562 bytes in 11,673 blocks ==678569== total heap usage: 6,684,211 allocs, 6,672,538 frees, 9,197,789,616 bytes allocated ==678569== ==678569== LEAK SUMMARY: ==678569== definitely lost: 0 bytes in 0 blocks ==678569== indirectly lost: 0 bytes in 0 blocks ==678569== possibly lost: 0 bytes in 0 blocks ==678569== still reachable: 56 bytes in 3 blocks ==678569== suppressed: 835,506 bytes in 11,670 blocks ==678569== Reachable blocks (those to which a pointer was found) are not shown. ==678569== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==678569== ==678569== For lists of detected and suppressed errors, rerun with: -s ==678569== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)