==678084== Memcheck, a memory error detector ==678084== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==678084== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==678084== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==678084== Parent PID: 676588 ==678084== ==678084== ==678084== FILE DESCRIPTORS: 9 open (3 std) at exit. ==678084== Open file descriptor 12: ==678084== at 0xD26026D: pipe (pipe.c:29) ==678084== by 0x18A1F07D: ??? ==678084== by 0x13FEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==678084== by 0x104CF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==678084== by 0x10468D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==678084== by 0xF15FD38: PetscInitialize (pinit.c:924) ==678084== by 0xCE5C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==678084== by 0xCE5C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==678084== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==678084== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==678084== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==678084== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==678084== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==678084== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==678084== ==678084== Open file descriptor 8: /dev/shm/open_mpi.0000 ==678084== at 0xD264C0C: __open_nocancel (open64_nocancel.c:39) ==678084== by 0xD1E8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==678084== by 0xCE96822: ??? ==678084== by 0xCE9696F: ??? ==678084== by 0x1408F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==678084== by 0x1408F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==678084== by 0x14045922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==678084== by 0x13FEA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==678084== by 0x104CF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==678084== by 0x10468D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==678084== by 0xF15FD38: PetscInitialize (pinit.c:924) ==678084== by 0xCE5C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==678084== by 0xCE5C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==678084== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==678084== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==678084== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==678084== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==678084== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==678084== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==678084== ==678084== Open file descriptor 116: ==678084== ==678084== ==678084== Open file descriptor 112: ==678084== ==678084== ==678084== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==678084== ==678084== ==678084== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==678084== ==678084== ==678084== ==678084== HEAP SUMMARY: ==678084== in use at exit: 835,596 bytes in 11,676 blocks ==678084== total heap usage: 66,246 allocs, 54,570 frees, 1,541,007,152 bytes allocated ==678084== ==678084== LEAK SUMMARY: ==678084== definitely lost: 0 bytes in 0 blocks ==678084== indirectly lost: 0 bytes in 0 blocks ==678084== possibly lost: 0 bytes in 0 blocks ==678084== still reachable: 24 bytes in 2 blocks ==678084== suppressed: 835,572 bytes in 11,674 blocks ==678084== Reachable blocks (those to which a pointer was found) are not shown. ==678084== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==678084== ==678084== For lists of detected and suppressed errors, rerun with: -s ==678084== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)