==821537== Memcheck, a memory error detector ==821537== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==821537== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==821537== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==821537== Parent PID: 812548 ==821537== ==821537== ==821537== FILE DESCRIPTORS: 9 open (3 std) at exit. ==821537== Open file descriptor 12: ==821537== at 0x1020C26D: pipe (pipe.c:29) ==821537== by 0x1A7A407D: ??? ==821537== by 0x159404CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==821537== by 0x11E67418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==821537== by 0x11E00D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==821537== by 0x10AF7D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==821537== by 0xFD2A153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==821537== by 0xFD2A1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==821537== by 0x23B2C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==821537== by 0x2317F9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==821537== by 0x235EC6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==821537== by 0x235D66: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==821537== by 0x2363FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==821537== by 0x22FC15: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==821537== ==821537== Open file descriptor 8: /dev/shm/open_mpi.0000 ==821537== at 0x10210C0C: __open_nocancel (open64_nocancel.c:39) ==821537== by 0x10194BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==821537== by 0xFD5E822: ??? ==821537== by 0xFD5E96F: ??? ==821537== by 0x159E56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==821537== by 0x159E5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==821537== by 0x1599B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==821537== by 0x159402DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==821537== by 0x11E67418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==821537== by 0x11E00D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==821537== by 0x10AF7D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==821537== by 0xFD2A153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==821537== by 0xFD2A1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==821537== by 0x23B2C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==821537== by 0x2317F9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==821537== by 0x235EC6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==821537== by 0x235D66: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==821537== by 0x2363FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==821537== by 0x22FC15: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==821537== ==821537== Open file descriptor 115: ==821537== ==821537== ==821537== Open file descriptor 112: ==821537== ==821537== ==821537== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==821537== ==821537== ==821537== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==821537== ==821537== ==821537== ==821537== HEAP SUMMARY: ==821537== in use at exit: 857,975 bytes in 12,109 blocks ==821537== total heap usage: 6,191,830 allocs, 6,179,721 frees, 2,256,567,937 bytes allocated ==821537== ==821537== LEAK SUMMARY: ==821537== definitely lost: 0 bytes in 0 blocks ==821537== indirectly lost: 0 bytes in 0 blocks ==821537== possibly lost: 0 bytes in 0 blocks ==821537== still reachable: 56 bytes in 3 blocks ==821537== suppressed: 857,919 bytes in 12,106 blocks ==821537== Reachable blocks (those to which a pointer was found) are not shown. ==821537== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==821537== ==821537== For lists of detected and suppressed errors, rerun with: -s ==821537== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)