==814453== Memcheck, a memory error detector ==814453== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==814453== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==814453== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==814453== Parent PID: 812548 ==814453== ==814453== ==814453== FILE DESCRIPTORS: 9 open (3 std) at exit. ==814453== Open file descriptor 12: ==814453== at 0xECE926D: pipe (pipe.c:29) ==814453== by 0x18AE107D: ??? ==814453== by 0x140844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==814453== by 0x105A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==814453== by 0x10541D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==814453== by 0xF236D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==814453== by 0xE807153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==814453== by 0xE8071A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==814453== by 0x226492: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==814453== by 0x21FB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==814453== by 0x223638: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==814453== by 0x2234D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==814453== by 0x223B6F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==814453== by 0x21DF15: main (TestOffLatticeSimulationWithPdes.cpp:19) ==814453== ==814453== Open file descriptor 8: /dev/shm/open_mpi.0000 ==814453== at 0xECEDC0C: __open_nocancel (open64_nocancel.c:39) ==814453== by 0xEC71BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==814453== by 0xE83B822: ??? ==814453== by 0xE83B96F: ??? ==814453== by 0x141296DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==814453== by 0x14129938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==814453== by 0x140DF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==814453== by 0x140842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==814453== by 0x105A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==814453== by 0x10541D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==814453== by 0xF236D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==814453== by 0xE807153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==814453== by 0xE8071A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==814453== by 0x226492: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==814453== by 0x21FB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==814453== by 0x223638: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==814453== by 0x2234D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==814453== by 0x223B6F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==814453== by 0x21DF15: main (TestOffLatticeSimulationWithPdes.cpp:19) ==814453== ==814453== Open file descriptor 115: ==814453== ==814453== ==814453== Open file descriptor 112: ==814453== ==814453== ==814453== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==814453== ==814453== ==814453== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==814453== ==814453== ==814453== ==814453== HEAP SUMMARY: ==814453== in use at exit: 857,959 bytes in 12,109 blocks ==814453== total heap usage: 5,963,944 allocs, 5,951,835 frees, 2,781,004,349 bytes allocated ==814453== ==814453== LEAK SUMMARY: ==814453== definitely lost: 0 bytes in 0 blocks ==814453== indirectly lost: 0 bytes in 0 blocks ==814453== possibly lost: 0 bytes in 0 blocks ==814453== still reachable: 56 bytes in 3 blocks ==814453== suppressed: 857,903 bytes in 12,106 blocks ==814453== Reachable blocks (those to which a pointer was found) are not shown. ==814453== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==814453== ==814453== For lists of detected and suppressed errors, rerun with: -s ==814453== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)