==814012== Memcheck, a memory error detector ==814012== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==814012== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==814012== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==814012== Parent PID: 812548 ==814012== ==814012== ==814012== FILE DESCRIPTORS: 9 open (3 std) at exit. ==814012== Open file descriptor 12: ==814012== at 0xD25126D: pipe (pipe.c:29) ==814012== by 0x18AE207D: ??? ==814012== by 0x140814CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==814012== by 0x104BF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==814012== by 0x10458D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==814012== by 0xF14FD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==814012== by 0xCE58153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==814012== by 0xCE581A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==814012== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==814012== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==814012== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==814012== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==814012== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==814012== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==814012== ==814012== Open file descriptor 8: /dev/shm/open_mpi.0000 ==814012== at 0xD255C0C: __open_nocancel (open64_nocancel.c:39) ==814012== by 0xD1D9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==814012== by 0xCE8C822: ??? ==814012== by 0xCE8C96F: ??? ==814012== by 0x141266DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==814012== by 0x14126938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==814012== by 0x140DC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==814012== by 0x140812DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==814012== by 0x104BF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==814012== by 0x10458D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==814012== by 0xF14FD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==814012== by 0xCE58153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==814012== by 0xCE581A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==814012== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==814012== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==814012== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==814012== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==814012== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==814012== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==814012== ==814012== Open file descriptor 115: ==814012== ==814012== ==814012== Open file descriptor 112: ==814012== ==814012== ==814012== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==814012== ==814012== ==814012== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==814012== ==814012== ==814012== ==814012== HEAP SUMMARY: ==814012== in use at exit: 857,987 bytes in 12,112 blocks ==814012== total heap usage: 66,529 allocs, 54,417 frees, 1,543,732,897 bytes allocated ==814012== ==814012== LEAK SUMMARY: ==814012== definitely lost: 0 bytes in 0 blocks ==814012== indirectly lost: 0 bytes in 0 blocks ==814012== possibly lost: 0 bytes in 0 blocks ==814012== still reachable: 24 bytes in 2 blocks ==814012== suppressed: 857,963 bytes in 12,110 blocks ==814012== Reachable blocks (those to which a pointer was found) are not shown. ==814012== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==814012== ==814012== For lists of detected and suppressed errors, rerun with: -s ==814012== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)