==851733== Memcheck, a memory error detector ==851733== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==851733== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==851733== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==851733== Parent PID: 849600 ==851733== ==851733== ==851733== FILE DESCRIPTORS: 9 open (3 std) at exit. ==851733== Open file descriptor 12: ==851733== at 0x10DE726D: pipe (pipe.c:29) ==851733== by 0x196AF07D: ??? ==851733== by 0x14C204CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==851733== by 0x10608418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==851733== by 0x105A1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==851733== by 0xF298D38: PetscInitialize (pinit.c:924) ==851733== by 0xF0FF2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==851733== by 0xF0FF32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==851733== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==851733== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==851733== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==851733== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==851733== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==851733== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==851733== ==851733== Open file descriptor 8: /dev/shm/open_mpi.0000 ==851733== at 0x10DEBC0C: __open_nocancel (open64_nocancel.c:39) ==851733== by 0x10D6FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==851733== by 0xF13A822: ??? ==851733== by 0xF13A96F: ??? ==851733== by 0x14CC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==851733== by 0x14CC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==851733== by 0x14C7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==851733== by 0x14C202DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==851733== by 0x10608418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==851733== by 0x105A1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==851733== by 0xF298D38: PetscInitialize (pinit.c:924) ==851733== by 0xF0FF2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==851733== by 0xF0FF32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==851733== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==851733== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==851733== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==851733== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==851733== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==851733== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==851733== ==851733== Open file descriptor 116: ==851733== ==851733== ==851733== Open file descriptor 112: ==851733== ==851733== ==851733== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==851733== ==851733== ==851733== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==851733== ==851733== ==851733== ==851733== HEAP SUMMARY: ==851733== in use at exit: 835,628 bytes in 11,677 blocks ==851733== total heap usage: 863,171 allocs, 851,494 frees, 1,705,805,366 bytes allocated ==851733== ==851733== LEAK SUMMARY: ==851733== definitely lost: 0 bytes in 0 blocks ==851733== indirectly lost: 0 bytes in 0 blocks ==851733== possibly lost: 0 bytes in 0 blocks ==851733== still reachable: 56 bytes in 3 blocks ==851733== suppressed: 835,572 bytes in 11,674 blocks ==851733== Reachable blocks (those to which a pointer was found) are not shown. ==851733== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==851733== ==851733== For lists of detected and suppressed errors, rerun with: -s ==851733== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)