==851219== Memcheck, a memory error detector ==851219== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==851219== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==851219== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==851219== Parent PID: 849600 ==851219== ==851219== ==851219== FILE DESCRIPTORS: 9 open (3 std) at exit. ==851219== Open file descriptor 12: ==851219== at 0xDB5F26D: pipe (pipe.c:29) ==851219== by 0x196AF07D: ??? ==851219== by 0x14C774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==851219== by 0x11160418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==851219== by 0x110F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==851219== by 0xFDF0D38: PetscInitialize (pinit.c:924) ==851219== by 0xD75A2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==851219== by 0xD75A32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==851219== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==851219== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==851219== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==851219== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==851219== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==851219== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==851219== ==851219== Open file descriptor 8: /dev/shm/open_mpi.0000 ==851219== at 0xDB63C0C: __open_nocancel (open64_nocancel.c:39) ==851219== by 0xDAE7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==851219== by 0xD795822: ??? ==851219== by 0xD79596F: ??? ==851219== by 0x14D1C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==851219== by 0x14D1C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==851219== by 0x14CD2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==851219== by 0x14C772DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==851219== by 0x11160418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==851219== by 0x110F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==851219== by 0xFDF0D38: PetscInitialize (pinit.c:924) ==851219== by 0xD75A2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==851219== by 0xD75A32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==851219== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==851219== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==851219== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==851219== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==851219== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==851219== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==851219== ==851219== Open file descriptor 116: ==851219== ==851219== ==851219== Open file descriptor 112: ==851219== ==851219== ==851219== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==851219== ==851219== ==851219== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==851219== ==851219== ==851219== ==851219== HEAP SUMMARY: ==851219== in use at exit: 835,596 bytes in 11,676 blocks ==851219== total heap usage: 66,780 allocs, 55,104 frees, 1,541,055,056 bytes allocated ==851219== ==851219== LEAK SUMMARY: ==851219== definitely lost: 0 bytes in 0 blocks ==851219== indirectly lost: 0 bytes in 0 blocks ==851219== possibly lost: 0 bytes in 0 blocks ==851219== still reachable: 24 bytes in 2 blocks ==851219== suppressed: 835,572 bytes in 11,674 blocks ==851219== Reachable blocks (those to which a pointer was found) are not shown. ==851219== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==851219== ==851219== For lists of detected and suppressed errors, rerun with: -s ==851219== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36)