==890636== Memcheck, a memory error detector ==890636== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==890636== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==890636== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info ==890636== Parent PID: 888828 ==890636== ==890636== ==890636== FILE DESCRIPTORS: 9 open (3 std) at exit. ==890636== Open file descriptor 12: ==890636== at 0xEB7626D: pipe (pipe.c:29) ==890636== by 0x18A1E07D: ??? ==890636== by 0x1402F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==890636== by 0x10816418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==890636== by 0x107AFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==890636== by 0xF4A6D38: PetscInitialize (pinit.c:924) ==890636== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==890636== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==890636== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==890636== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==890636== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==890636== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==890636== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==890636== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==890636== ==890636== Open file descriptor 8: /dev/shm/open_mpi.0000 ==890636== at 0xEB7AC0C: __open_nocancel (open64_nocancel.c:39) ==890636== by 0xEAFEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==890636== by 0xE4A9822: ??? ==890636== by 0xE4A996F: ??? ==890636== by 0x140D46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==890636== by 0x140D4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==890636== by 0x1408A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==890636== by 0x1402F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==890636== by 0x10816418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==890636== by 0x107AFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==890636== by 0xF4A6D38: PetscInitialize (pinit.c:924) ==890636== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==890636== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==890636== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==890636== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==890636== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==890636== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==890636== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==890636== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==890636== ==890636== Open file descriptor 116: ==890636== ==890636== ==890636== Open file descriptor 112: ==890636== ==890636== ==890636== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt ==890636== ==890636== ==890636== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==890636== ==890636== ==890636== ==890636== HEAP SUMMARY: ==890636== in use at exit: 835,628 bytes in 11,677 blocks ==890636== total heap usage: 1,132,964 allocs, 1,121,287 frees, 1,617,728,588 bytes allocated ==890636== ==890636== LEAK SUMMARY: ==890636== definitely lost: 0 bytes in 0 blocks ==890636== indirectly lost: 0 bytes in 0 blocks ==890636== possibly lost: 0 bytes in 0 blocks ==890636== still reachable: 56 bytes in 3 blocks ==890636== suppressed: 835,572 bytes in 11,674 blocks ==890636== Reachable blocks (those to which a pointer was found) are not shown. ==890636== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==890636== ==890636== For lists of detected and suppressed errors, rerun with: -s ==890636== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)