==954047== Memcheck, a memory error detector ==954047== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==954047== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==954047== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==954047== Parent PID: 952536 ==954047== ==954047== ==954047== FILE DESCRIPTORS: 9 open (3 std) at exit. ==954047== Open file descriptor 12: ==954047== at 0xEF9426D: pipe (pipe.c:29) ==954047== by 0x1977407D: ??? ==954047== by 0x139094CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==954047== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==954047== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==954047== by 0xD871D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==954047== by 0xD6E32DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==954047== by 0xD6E332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==954047== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==954047== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==954047== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==954047== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==954047== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==954047== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==954047== ==954047== Open file descriptor 8: /dev/shm/open_mpi.0000 ==954047== at 0xEF98C0C: __open_nocancel (open64_nocancel.c:39) ==954047== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==954047== by 0xD718822: ??? ==954047== by 0xD71896F: ??? ==954047== by 0x139AE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==954047== by 0x139AE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==954047== by 0x13964922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==954047== by 0x139092DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==954047== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==954047== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==954047== by 0xD871D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==954047== by 0xD6E32DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==954047== by 0xD6E332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==954047== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==954047== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==954047== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==954047== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==954047== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==954047== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==954047== ==954047== Open file descriptor 115: ==954047== ==954047== ==954047== Open file descriptor 112: ==954047== ==954047== ==954047== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==954047== ==954047== ==954047== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==954047== ==954047== ==954047== ==954047== HEAP SUMMARY: ==954047== in use at exit: 857,987 bytes in 12,112 blocks ==954047== total heap usage: 174,753 allocs, 162,641 frees, 1,554,108,623 bytes allocated ==954047== ==954047== LEAK SUMMARY: ==954047== definitely lost: 0 bytes in 0 blocks ==954047== indirectly lost: 0 bytes in 0 blocks ==954047== possibly lost: 0 bytes in 0 blocks ==954047== still reachable: 24 bytes in 2 blocks ==954047== suppressed: 857,963 bytes in 12,110 blocks ==954047== Reachable blocks (those to which a pointer was found) are not shown. ==954047== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==954047== ==954047== For lists of detected and suppressed errors, rerun with: -s ==954047== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)