==963622== Memcheck, a memory error detector ==963622== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==963622== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==963622== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==963622== Parent PID: 952536 ==963622== ==963622== Warning: invalid file descriptor -1 in syscall close() ==963622== ==963622== FILE DESCRIPTORS: 9 open (3 std) at exit. ==963622== Open file descriptor 12: ==963622== at 0xBDBA26D: pipe (pipe.c:29) ==963622== by 0x143EC07D: ??? ==963622== by 0x100964CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==963622== by 0xB9EF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==963622== by 0xB988D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==963622== by 0xA2CAD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==963622== by 0xA13A2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==963622== by 0xA13A32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==963622== by 0x14A212: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==963622== by 0x1417ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==963622== by 0x14497C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==963622== by 0x14481C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==963622== by 0x144EB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==963622== by 0x13FBC5: main (TestMonodomainProblem.cpp:19) ==963622== ==963622== Open file descriptor 8: /dev/shm/open_mpi.0000 ==963622== at 0xBDBEC0C: __open_nocancel (open64_nocancel.c:39) ==963622== by 0xBD42BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==963622== by 0xA16F822: ??? ==963622== by 0xA16F96F: ??? ==963622== by 0x1013B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==963622== by 0x1013B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==963622== by 0x100F1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==963622== by 0x100962DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==963622== by 0xB9EF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==963622== by 0xB988D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==963622== by 0xA2CAD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==963622== by 0xA13A2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==963622== by 0xA13A32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==963622== by 0x14A212: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==963622== by 0x1417ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==963622== by 0x14497C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==963622== by 0x14481C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==963622== by 0x144EB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==963622== by 0x13FBC5: main (TestMonodomainProblem.cpp:19) ==963622== ==963622== Open file descriptor 115: ==963622== ==963622== ==963622== Open file descriptor 112: ==963622== ==963622== ==963622== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==963622== ==963622== ==963622== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==963622== ==963622== ==963622== ==963622== HEAP SUMMARY: ==963622== in use at exit: 858,423 bytes in 12,118 blocks ==963622== total heap usage: 6,271,492 allocs, 6,259,374 frees, 4,206,283,494 bytes allocated ==963622== ==963622== LEAK SUMMARY: ==963622== definitely lost: 0 bytes in 0 blocks ==963622== indirectly lost: 0 bytes in 0 blocks ==963622== possibly lost: 0 bytes in 0 blocks ==963622== still reachable: 24 bytes in 2 blocks ==963622== suppressed: 858,399 bytes in 12,116 blocks ==963622== Reachable blocks (those to which a pointer was found) are not shown. ==963622== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==963622== ==963622== For lists of detected and suppressed errors, rerun with: -s ==963622== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 114 from 20)