==954318== Memcheck, a memory error detector ==954318== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==954318== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==954318== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithParticles -malloc_debug -malloc_dump -memory_info ==954318== Parent PID: 952536 ==954318== ==954318== ==954318== FILE DESCRIPTORS: 9 open (3 std) at exit. ==954318== Open file descriptor 12: ==954318== at 0xF5DB26D: pipe (pipe.c:29) ==954318== by 0x1977407D: ??? ==954318== by 0x14D114CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==954318== by 0x11238418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==954318== by 0x111D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==954318== by 0xFEC6D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==954318== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==954318== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==954318== by 0x2E2B7A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==954318== by 0x2D93D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==954318== by 0x2DDD40: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==954318== by 0x2DDBE0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==954318== by 0x2DE277: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==954318== by 0x2D77F5: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==954318== ==954318== Open file descriptor 8: /dev/shm/open_mpi.0000 ==954318== at 0xF5DFC0C: __open_nocancel (open64_nocancel.c:39) ==954318== by 0xF563BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==954318== by 0xF12F822: ??? ==954318== by 0xF12F96F: ??? ==954318== by 0x14DB66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==954318== by 0x14DB6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==954318== by 0x14D6C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==954318== by 0x14D112DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==954318== by 0x11238418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==954318== by 0x111D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==954318== by 0xFEC6D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==954318== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==954318== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==954318== by 0x2E2B7A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==954318== by 0x2D93D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==954318== by 0x2DDD40: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==954318== by 0x2DDBE0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==954318== by 0x2DE277: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==954318== by 0x2D77F5: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==954318== ==954318== Open file descriptor 115: ==954318== ==954318== ==954318== Open file descriptor 112: ==954318== ==954318== ==954318== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithParticles_valgrind.txt ==954318== ==954318== ==954318== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==954318== ==954318== ==954318== ==954318== HEAP SUMMARY: ==954318== in use at exit: 858,019 bytes in 12,113 blocks ==954318== total heap usage: 112,022 allocs, 99,909 frees, 1,550,655,583 bytes allocated ==954318== ==954318== LEAK SUMMARY: ==954318== definitely lost: 0 bytes in 0 blocks ==954318== indirectly lost: 0 bytes in 0 blocks ==954318== possibly lost: 0 bytes in 0 blocks ==954318== still reachable: 56 bytes in 3 blocks ==954318== suppressed: 857,963 bytes in 12,110 blocks ==954318== Reachable blocks (those to which a pointer was found) are not shown. ==954318== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==954318== ==954318== For lists of detected and suppressed errors, rerun with: -s ==954318== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 26 from 26)