==954681== Memcheck, a memory error detector ==954681== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==954681== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==954681== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==954681== Parent PID: 952536 ==954681== ==954681== ==954681== FILE DESCRIPTORS: 9 open (3 std) at exit. ==954681== Open file descriptor 12: ==954681== at 0xF59926D: pipe (pipe.c:29) ==954681== by 0x1977407D: ??? ==954681== by 0x14D114CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==954681== by 0x11238418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==954681== by 0x111D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==954681== by 0xFEC8D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==954681== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==954681== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==954681== by 0x1337B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==954681== by 0x12E7D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==954681== by 0x130F28: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==954681== by 0x130E23: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==954681== by 0x131437: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==954681== by 0x12CFD5: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==954681== ==954681== Open file descriptor 8: /dev/shm/open_mpi.0000 ==954681== at 0xF59DC0C: __open_nocancel (open64_nocancel.c:39) ==954681== by 0xF521BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==954681== by 0xF12F822: ??? ==954681== by 0xF12F96F: ??? ==954681== by 0x14DB66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==954681== by 0x14DB6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==954681== by 0x14D6C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==954681== by 0x14D112DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==954681== by 0x11238418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==954681== by 0x111D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==954681== by 0xFEC8D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==954681== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==954681== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==954681== by 0x1337B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==954681== by 0x12E7D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==954681== by 0x130F28: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==954681== by 0x130E23: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==954681== by 0x131437: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==954681== by 0x12CFD5: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==954681== ==954681== Open file descriptor 115: ==954681== ==954681== ==954681== Open file descriptor 112: ==954681== ==954681== ==954681== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==954681== ==954681== ==954681== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==954681== ==954681== ==954681== ==954681== HEAP SUMMARY: ==954681== in use at exit: 857,959 bytes in 12,109 blocks ==954681== total heap usage: 6,674,874 allocs, 6,662,765 frees, 9,199,475,587 bytes allocated ==954681== ==954681== LEAK SUMMARY: ==954681== definitely lost: 0 bytes in 0 blocks ==954681== indirectly lost: 0 bytes in 0 blocks ==954681== possibly lost: 0 bytes in 0 blocks ==954681== still reachable: 56 bytes in 3 blocks ==954681== suppressed: 857,903 bytes in 12,106 blocks ==954681== Reachable blocks (those to which a pointer was found) are not shown. ==954681== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==954681== ==954681== For lists of detected and suppressed errors, rerun with: -s ==954681== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)