==954764== Memcheck, a memory error detector ==954764== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==954764== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==954764== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==954764== Parent PID: 952536 ==954764== ==954764== ==954764== FILE DESCRIPTORS: 9 open (3 std) at exit. ==954764== Open file descriptor 12: ==954764== at 0xFD9E26D: pipe (pipe.c:29) ==954764== by 0x1977307D: ??? ==954764== by 0x14E834CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==954764== by 0x119F9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==954764== by 0x11992D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==954764== by 0x10689D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==954764== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==954764== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==954764== by 0x1D43E2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==954764== by 0x1CDD79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==954764== by 0x1D14B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==954764== by 0x1D1350: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==954764== by 0x1D19E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==954764== by 0x1CC195: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==954764== ==954764== Open file descriptor 8: /dev/shm/open_mpi.0000 ==954764== at 0xFDA2C0C: __open_nocancel (open64_nocancel.c:39) ==954764== by 0xFD26BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==954764== by 0xF12F822: ??? ==954764== by 0xF12F96F: ??? ==954764== by 0x14F286DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==954764== by 0x14F28938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==954764== by 0x14EDE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==954764== by 0x14E832DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==954764== by 0x119F9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==954764== by 0x11992D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==954764== by 0x10689D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==954764== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==954764== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==954764== by 0x1D43E2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==954764== by 0x1CDD79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==954764== by 0x1D14B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==954764== by 0x1D1350: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==954764== by 0x1D19E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==954764== by 0x1CC195: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==954764== ==954764== Open file descriptor 115: ==954764== ==954764== ==954764== Open file descriptor 112: ==954764== ==954764== ==954764== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==954764== ==954764== ==954764== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==954764== ==954764== ==954764== ==954764== HEAP SUMMARY: ==954764== in use at exit: 857,959 bytes in 12,109 blocks ==954764== total heap usage: 6,556,414 allocs, 6,544,305 frees, 8,227,986,653 bytes allocated ==954764== ==954764== LEAK SUMMARY: ==954764== definitely lost: 0 bytes in 0 blocks ==954764== indirectly lost: 0 bytes in 0 blocks ==954764== possibly lost: 0 bytes in 0 blocks ==954764== still reachable: 56 bytes in 3 blocks ==954764== suppressed: 857,903 bytes in 12,106 blocks ==954764== Reachable blocks (those to which a pointer was found) are not shown. ==954764== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==954764== ==954764== For lists of detected and suppressed errors, rerun with: -s ==954764== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)