==961836== Memcheck, a memory error detector ==961836== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==961836== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==961836== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==961836== Parent PID: 952536 ==961836== ==961836== ==961836== FILE DESCRIPTORS: 9 open (3 std) at exit. ==961836== Open file descriptor 12: ==961836== at 0x1222826D: pipe (pipe.c:29) ==961836== by 0x1B43307D: ??? ==961836== by 0x1657E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==961836== by 0x11E75418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==961836== by 0x11E0ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==961836== by 0x10AE2D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==961836== by 0x109B92DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==961836== by 0x109B932D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==961836== by 0x123DF1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==961836== by 0x11F6D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==961836== by 0x1218D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==961836== by 0x1217D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==961836== by 0x121DE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==961836== by 0x11DED5: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==961836== ==961836== Open file descriptor 8: /dev/shm/open_mpi.0000 ==961836== at 0x1222CC0C: __open_nocancel (open64_nocancel.c:39) ==961836== by 0x121B0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==961836== by 0x11D6C822: ??? ==961836== by 0x11D6C96F: ??? ==961836== by 0x166236DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==961836== by 0x16623938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==961836== by 0x165D9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==961836== by 0x1657E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==961836== by 0x11E75418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==961836== by 0x11E0ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==961836== by 0x10AE2D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==961836== by 0x109B92DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==961836== by 0x109B932D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==961836== by 0x123DF1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==961836== by 0x11F6D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==961836== by 0x1218D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==961836== by 0x1217D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==961836== by 0x121DE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==961836== by 0x11DED5: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==961836== ==961836== Open file descriptor 115: ==961836== ==961836== ==961836== Open file descriptor 112: ==961836== ==961836== ==961836== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==961836== ==961836== ==961836== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==961836== ==961836== ==961836== ==961836== HEAP SUMMARY: ==961836== in use at exit: 857,975 bytes in 12,109 blocks ==961836== total heap usage: 16,194,871 allocs, 16,182,762 frees, 3,034,404,348 bytes allocated ==961836== ==961836== LEAK SUMMARY: ==961836== definitely lost: 0 bytes in 0 blocks ==961836== indirectly lost: 0 bytes in 0 blocks ==961836== possibly lost: 0 bytes in 0 blocks ==961836== still reachable: 56 bytes in 3 blocks ==961836== suppressed: 857,919 bytes in 12,106 blocks ==961836== Reachable blocks (those to which a pointer was found) are not shown. ==961836== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==961836== ==961836== For lists of detected and suppressed errors, rerun with: -s ==961836== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)