==961474== Memcheck, a memory error detector ==961474== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==961474== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==961474== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==961474== Parent PID: 952536 ==961474== ==961474== ==961474== FILE DESCRIPTORS: 9 open (3 std) at exit. ==961474== Open file descriptor 12: ==961474== at 0xF84E26D: pipe (pipe.c:29) ==961474== by 0x1977107D: ??? ==961474== by 0x14D174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==961474== by 0x1114F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==961474== by 0x110E8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==961474== by 0xFDDFD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==961474== by 0xF4962DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==961474== by 0xF49632D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==961474== by 0x11C9B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==961474== by 0x1182D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==961474== by 0x11A55A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==961474== by 0x11A455: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==961474== by 0x11AA69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==961474== by 0x116AD5: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==961474== ==961474== Open file descriptor 8: /dev/shm/open_mpi.0000 ==961474== at 0xF852C0C: __open_nocancel (open64_nocancel.c:39) ==961474== by 0xF7D6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==961474== by 0xF4CB822: ??? ==961474== by 0xF4CB96F: ??? ==961474== by 0x14DBC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==961474== by 0x14DBC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==961474== by 0x14D72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==961474== by 0x14D172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==961474== by 0x1114F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==961474== by 0x110E8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==961474== by 0xFDDFD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==961474== by 0xF4962DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==961474== by 0xF49632D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==961474== by 0x11C9B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==961474== by 0x1182D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==961474== by 0x11A55A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==961474== by 0x11A455: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==961474== by 0x11AA69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==961474== by 0x116AD5: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==961474== ==961474== Open file descriptor 115: ==961474== ==961474== ==961474== Open file descriptor 112: ==961474== ==961474== ==961474== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==961474== ==961474== ==961474== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==961474== ==961474== ==961474== ==961474== HEAP SUMMARY: ==961474== in use at exit: 857,959 bytes in 12,109 blocks ==961474== total heap usage: 1,818,419 allocs, 1,806,310 frees, 1,867,377,840 bytes allocated ==961474== ==961474== LEAK SUMMARY: ==961474== definitely lost: 0 bytes in 0 blocks ==961474== indirectly lost: 0 bytes in 0 blocks ==961474== possibly lost: 0 bytes in 0 blocks ==961474== still reachable: 56 bytes in 3 blocks ==961474== suppressed: 857,903 bytes in 12,106 blocks ==961474== Reachable blocks (those to which a pointer was found) are not shown. ==961474== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==961474== ==961474== For lists of detected and suppressed errors, rerun with: -s ==961474== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)