==496502== Memcheck, a memory error detector ==496502== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==496502== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==496502== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataWriter -malloc_debug -malloc_dump -memory_info ==496502== Parent PID: 496273 ==496502== ==496502== Warning: invalid file descriptor -1 in syscall close() ==496502== ==496502== FILE DESCRIPTORS: 9 open (3 std) at exit. ==496502== Open file descriptor 12: ==496502== at 0x659426D: pipe (pipe.c:29) ==496502== by 0xAF1907D: ??? ==496502== by 0x8F3E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==496502== by 0x61E3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==496502== by 0x617CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==496502== by 0x4A96D38: PetscInitialize (pinit.c:924) ==496502== by 0x496D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==496502== by 0x496D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==496502== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==496502== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==496502== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==496502== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==496502== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==496502== by 0x115255: main (TestHdf5DataWriter.cpp:19) ==496502== ==496502== Open file descriptor 8: /dev/shm/open_mpi.0000 ==496502== at 0x6598C0C: __open_nocancel (open64_nocancel.c:39) ==496502== by 0x651CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==496502== by 0x5D20822: ??? ==496502== by 0x5D2096F: ??? ==496502== by 0x8FE36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==496502== by 0x8FE3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==496502== by 0x8F99922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==496502== by 0x8F3E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==496502== by 0x61E3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==496502== by 0x617CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==496502== by 0x4A96D38: PetscInitialize (pinit.c:924) ==496502== by 0x496D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==496502== by 0x496D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==496502== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==496502== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==496502== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==496502== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==496502== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==496502== by 0x115255: main (TestHdf5DataWriter.cpp:19) ==496502== ==496502== Open file descriptor 115: ==496502== ==496502== ==496502== Open file descriptor 110: ==496502== ==496502== ==496502== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataWriter_valgrind.txt ==496502== ==496502== ==496502== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==496502== ==496502== ==496502== ==496502== HEAP SUMMARY: ==496502== in use at exit: 995,564 bytes in 13,923 blocks ==496502== total heap usage: 127,711 allocs, 113,788 frees, 1,645,854,478 bytes allocated ==496502== ==496502== LEAK SUMMARY: ==496502== definitely lost: 0 bytes in 0 blocks ==496502== indirectly lost: 0 bytes in 0 blocks ==496502== possibly lost: 0 bytes in 0 blocks ==496502== still reachable: 24 bytes in 2 blocks ==496502== suppressed: 995,540 bytes in 13,921 blocks ==496502== Reachable blocks (those to which a pointer was found) are not shown. ==496502== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==496502== ==496502== For lists of detected and suppressed errors, rerun with: -s ==496502== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 98 from 35)