==1099618== Memcheck, a memory error detector ==1099618== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1099618== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1099618== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1099618== Parent PID: 1090844 ==1099618== ==1099618== ==1099618== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1099618== Open file descriptor 12: ==1099618== at 0xFDBC26D: pipe (pipe.c:29) ==1099618== by 0x18ADF07D: ??? ==1099618== by 0x140294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1099618== by 0xF922418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1099618== by 0xF8BBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1099618== by 0xE58FD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1099618== by 0xE467153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1099618== by 0xE4671A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1099618== by 0x129805: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1099618== by 0x1249ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1099618== by 0x127006: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1099618== by 0x126EA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1099618== by 0x12753D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1099618== by 0x122E15: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==1099618== ==1099618== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1099618== at 0xFDC0C0C: __open_nocancel (open64_nocancel.c:39) ==1099618== by 0xFD44BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1099618== by 0xF819822: ??? ==1099618== by 0xF81996F: ??? ==1099618== by 0x140D06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1099618== by 0x140D0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1099618== by 0x14086922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1099618== by 0x140292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1099618== by 0xF922418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1099618== by 0xF8BBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1099618== by 0xE58FD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1099618== by 0xE467153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1099618== by 0xE4671A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1099618== by 0x129805: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1099618== by 0x1249ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1099618== by 0x127006: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1099618== by 0x126EA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1099618== by 0x12753D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1099618== by 0x122E15: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==1099618== ==1099618== Open file descriptor 115: ==1099618== ==1099618== ==1099618== Open file descriptor 112: ==1099618== ==1099618== ==1099618== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==1099618== ==1099618== ==1099618== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1099618== ==1099618== ==1099618== ==1099618== HEAP SUMMARY: ==1099618== in use at exit: 857,961 bytes in 12,109 blocks ==1099618== total heap usage: 1,396,281 allocs, 1,384,172 frees, 1,602,343,964 bytes allocated ==1099618== ==1099618== LEAK SUMMARY: ==1099618== definitely lost: 0 bytes in 0 blocks ==1099618== indirectly lost: 0 bytes in 0 blocks ==1099618== possibly lost: 0 bytes in 0 blocks ==1099618== still reachable: 56 bytes in 3 blocks ==1099618== suppressed: 857,905 bytes in 12,106 blocks ==1099618== Reachable blocks (those to which a pointer was found) are not shown. ==1099618== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1099618== ==1099618== For lists of detected and suppressed errors, rerun with: -s ==1099618== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)