==1092320== Memcheck, a memory error detector ==1092320== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1092320== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1092320== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==1092320== Parent PID: 1090844 ==1092320== ==1092320== ==1092320== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1092320== Open file descriptor 12: ==1092320== at 0xD24D26D: pipe (pipe.c:29) ==1092320== by 0x18AE007D: ??? ==1092320== by 0x1407D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1092320== by 0x104BB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1092320== by 0x10454D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1092320== by 0xF14BD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1092320== by 0xCE54153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1092320== by 0xCE541A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1092320== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1092320== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1092320== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1092320== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1092320== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1092320== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==1092320== ==1092320== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1092320== at 0xD251C0C: __open_nocancel (open64_nocancel.c:39) ==1092320== by 0xD1D5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1092320== by 0xCE88822: ??? ==1092320== by 0xCE8896F: ??? ==1092320== by 0x141226DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1092320== by 0x14122938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1092320== by 0x140D8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1092320== by 0x1407D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1092320== by 0x104BB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1092320== by 0x10454D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1092320== by 0xF14BD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1092320== by 0xCE54153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1092320== by 0xCE541A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1092320== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1092320== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1092320== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1092320== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1092320== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1092320== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==1092320== ==1092320== Open file descriptor 115: ==1092320== ==1092320== ==1092320== Open file descriptor 112: ==1092320== ==1092320== ==1092320== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==1092320== ==1092320== ==1092320== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1092320== ==1092320== ==1092320== ==1092320== HEAP SUMMARY: ==1092320== in use at exit: 857,992 bytes in 12,112 blocks ==1092320== total heap usage: 66,526 allocs, 54,414 frees, 1,543,732,912 bytes allocated ==1092320== ==1092320== LEAK SUMMARY: ==1092320== definitely lost: 0 bytes in 0 blocks ==1092320== indirectly lost: 0 bytes in 0 blocks ==1092320== possibly lost: 0 bytes in 0 blocks ==1092320== still reachable: 24 bytes in 2 blocks ==1092320== suppressed: 857,968 bytes in 12,110 blocks ==1092320== Reachable blocks (those to which a pointer was found) are not shown. ==1092320== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1092320== ==1092320== For lists of detected and suppressed errors, rerun with: -s ==1092320== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)