==1132181== Memcheck, a memory error detector ==1132181== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1132181== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1132181== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info ==1132181== Parent PID: 1130400 ==1132181== ==1132181== ==1132181== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1132181== Open file descriptor 12: ==1132181== at 0xE81E26D: pipe (pipe.c:29) ==1132181== by 0x18ADF07D: ??? ==1132181== by 0x1407C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1132181== by 0x104BB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1132181== by 0x10454D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1132181== by 0xF14BD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1132181== by 0xE467153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1132181== by 0xE4671A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1132181== by 0x12211E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1132181== by 0x11D8CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1132181== by 0x11FC58: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1132181== by 0x11FAF8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1132181== by 0x12018F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1132181== by 0x11BCF5: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==1132181== ==1132181== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1132181== at 0xE822C0C: __open_nocancel (open64_nocancel.c:39) ==1132181== by 0xE7A6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1132181== by 0xE49B822: ??? ==1132181== by 0xE49B96F: ??? ==1132181== by 0x141216DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1132181== by 0x14121938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1132181== by 0x140D7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1132181== by 0x1407C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1132181== by 0x104BB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1132181== by 0x10454D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1132181== by 0xF14BD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1132181== by 0xE467153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1132181== by 0xE4671A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1132181== by 0x12211E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1132181== by 0x11D8CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1132181== by 0x11FC58: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1132181== by 0x11FAF8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1132181== by 0x12018F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1132181== by 0x11BCF5: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==1132181== ==1132181== Open file descriptor 115: ==1132181== ==1132181== ==1132181== Open file descriptor 112: ==1132181== ==1132181== ==1132181== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt ==1132181== ==1132181== ==1132181== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1132181== ==1132181== ==1132181== ==1132181== HEAP SUMMARY: ==1132181== in use at exit: 858,024 bytes in 12,113 blocks ==1132181== total heap usage: 1,077,882 allocs, 1,065,769 frees, 1,617,959,579 bytes allocated ==1132181== ==1132181== LEAK SUMMARY: ==1132181== definitely lost: 0 bytes in 0 blocks ==1132181== indirectly lost: 0 bytes in 0 blocks ==1132181== possibly lost: 0 bytes in 0 blocks ==1132181== still reachable: 56 bytes in 3 blocks ==1132181== suppressed: 857,968 bytes in 12,110 blocks ==1132181== Reachable blocks (those to which a pointer was found) are not shown. ==1132181== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1132181== ==1132181== For lists of detected and suppressed errors, rerun with: -s ==1132181== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)