==1423389== Memcheck, a memory error detector ==1423389== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1423389== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1423389== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==1423389== Parent PID: 1421288 ==1423389== ==1423389== ==1423389== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1423389== Open file descriptor 12: ==1423389== at 0x10DE1E8D: pipe (pipe.c:29) ==1423389== by 0x196AB07D: ??? ==1423389== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1423389== by 0x10603418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1423389== by 0x1059CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1423389== by 0xF293D38: PetscInitialize (pinit.c:924) ==1423389== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1423389== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1423389== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1423389== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1423389== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1423389== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1423389== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1423389== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==1423389== ==1423389== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1423389== at 0x10DE682C: __open_nocancel (open64_nocancel.c:39) ==1423389== by 0x10D6ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1423389== by 0xF135822: ??? ==1423389== by 0xF13596F: ??? ==1423389== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1423389== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1423389== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1423389== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1423389== by 0x10603418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1423389== by 0x1059CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1423389== by 0xF293D38: PetscInitialize (pinit.c:924) ==1423389== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1423389== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1423389== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1423389== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1423389== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1423389== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1423389== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1423389== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==1423389== ==1423389== Open file descriptor 116: ==1423389== ==1423389== ==1423389== Open file descriptor 112: ==1423389== ==1423389== ==1423389== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==1423389== ==1423389== ==1423389== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1423389== ==1423389== ==1423389== ==1423389== HEAP SUMMARY: ==1423389== in use at exit: 835,633 bytes in 11,677 blocks ==1423389== total heap usage: 863,191 allocs, 851,514 frees, 1,705,806,014 bytes allocated ==1423389== ==1423389== LEAK SUMMARY: ==1423389== definitely lost: 0 bytes in 0 blocks ==1423389== indirectly lost: 0 bytes in 0 blocks ==1423389== possibly lost: 0 bytes in 0 blocks ==1423389== still reachable: 56 bytes in 3 blocks ==1423389== suppressed: 835,577 bytes in 11,674 blocks ==1423389== Reachable blocks (those to which a pointer was found) are not shown. ==1423389== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1423389== ==1423389== For lists of detected and suppressed errors, rerun with: -s ==1423389== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)