==1347275== Memcheck, a memory error detector ==1347275== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1347275== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1347275== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataWriter -malloc_debug -malloc_dump -memory_info ==1347275== Parent PID: 1347053 ==1347275== ==1347275== Warning: invalid file descriptor -1 in syscall close() ==1347275== ==1347275== FILE DESCRIPTORS: 10 open (3 std) at exit. ==1347275== Open file descriptor 12: ==1347275== at 0x659026D: pipe (pipe.c:29) ==1347275== by 0xAF1407D: ??? ==1347275== by 0x8F394CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1347275== by 0x61DF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1347275== by 0x6178D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1347275== by 0x4A95D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1347275== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1347275== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1347275== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1347275== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1347275== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1347275== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1347275== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1347275== by 0x115255: main (TestHdf5DataWriter.cpp:19) ==1347275== ==1347275== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1347275== at 0x6594C0C: __open_nocancel (open64_nocancel.c:39) ==1347275== by 0x6518BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1347275== by 0x5D1F822: ??? ==1347275== by 0x5D1F96F: ??? ==1347275== by 0x8FDE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1347275== by 0x8FDE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1347275== by 0x8F94922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1347275== by 0x8F392DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1347275== by 0x61DF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1347275== by 0x6178D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1347275== by 0x4A95D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1347275== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1347275== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1347275== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1347275== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1347275== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1347275== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1347275== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1347275== by 0x115255: main (TestHdf5DataWriter.cpp:19) ==1347275== ==1347275== Open file descriptor 119: ==1347275== ==1347275== ==1347275== Open file descriptor 115: ==1347275== ==1347275== ==1347275== Open file descriptor 114: /etc/ssl/certs/ca-certificates.crt ==1347275== ==1347275== ==1347275== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataWriter_valgrind.txt ==1347275== ==1347275== ==1347275== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1347275== ==1347275== ==1347275== ==1347275== HEAP SUMMARY: ==1347275== in use at exit: 857,992 bytes in 12,122 blocks ==1347275== total heap usage: 124,169 allocs, 112,047 frees, 1,617,315,274 bytes allocated ==1347275== ==1347275== LEAK SUMMARY: ==1347275== definitely lost: 0 bytes in 0 blocks ==1347275== indirectly lost: 0 bytes in 0 blocks ==1347275== possibly lost: 0 bytes in 0 blocks ==1347275== still reachable: 24 bytes in 2 blocks ==1347275== suppressed: 857,968 bytes in 12,120 blocks ==1347275== Reachable blocks (those to which a pointer was found) are not shown. ==1347275== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1347275== ==1347275== For lists of detected and suppressed errors, rerun with: -s ==1347275== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 84 from 21)