==1348680== Memcheck, a memory error detector ==1348680== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1348680== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1348680== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMutableVertexMeshOperationsWithPopulationSrn -malloc_debug -malloc_dump -memory_info ==1348680== Parent PID: 1347053 ==1348680== ==1348680== ==1348680== FILE DESCRIPTORS: 10 open (3 std) at exit. ==1348680== Open file descriptor 12: ==1348680== at 0xFCD326D: pipe (pipe.c:29) ==1348680== by 0x18ADF07D: ??? ==1348680== by 0x140294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1348680== by 0xF922418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1348680== by 0xF8BBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1348680== by 0xE58FD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1348680== by 0xE467153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1348680== by 0xE4671A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1348680== by 0x12E99F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1348680== by 0x129A93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1348680== by 0x12C240: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1348680== by 0x12C13C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1348680== by 0x12C74F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1348680== by 0x128295: main (TestMutableVertexMeshOperationsWithPopulationSrn.cpp:18) ==1348680== ==1348680== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1348680== at 0xFCD7C0C: __open_nocancel (open64_nocancel.c:39) ==1348680== by 0xFC5BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1348680== by 0xF819822: ??? ==1348680== by 0xF81996F: ??? ==1348680== by 0x140D06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1348680== by 0x140D0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1348680== by 0x14086922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1348680== by 0x140292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1348680== by 0xF922418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1348680== by 0xF8BBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1348680== by 0xE58FD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1348680== by 0xE467153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1348680== by 0xE4671A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1348680== by 0x12E99F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1348680== by 0x129A93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1348680== by 0x12C240: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1348680== by 0x12C13C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1348680== by 0x12C74F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1348680== by 0x128295: main (TestMutableVertexMeshOperationsWithPopulationSrn.cpp:18) ==1348680== ==1348680== Open file descriptor 119: ==1348680== ==1348680== ==1348680== Open file descriptor 115: ==1348680== ==1348680== ==1348680== Open file descriptor 114: /etc/ssl/certs/ca-certificates.crt ==1348680== ==1348680== ==1348680== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt ==1348680== ==1348680== ==1348680== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1348680== ==1348680== ==1348680== ==1348680== HEAP SUMMARY: ==1348680== in use at exit: 858,024 bytes in 12,113 blocks ==1348680== total heap usage: 68,909 allocs, 56,796 frees, 1,543,730,624 bytes allocated ==1348680== ==1348680== LEAK SUMMARY: ==1348680== definitely lost: 0 bytes in 0 blocks ==1348680== indirectly lost: 0 bytes in 0 blocks ==1348680== possibly lost: 0 bytes in 0 blocks ==1348680== still reachable: 56 bytes in 3 blocks ==1348680== suppressed: 857,968 bytes in 12,110 blocks ==1348680== Reachable blocks (those to which a pointer was found) are not shown. ==1348680== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1348680== ==1348680== For lists of detected and suppressed errors, rerun with: -s ==1348680== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)