==1350159== Memcheck, a memory error detector ==1350159== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1350159== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1350159== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==1350159== Parent PID: 1347053 ==1350159== ==1350159== ==1350159== FILE DESCRIPTORS: 10 open (3 std) at exit. ==1350159== Open file descriptor 12: ==1350159== at 0xECA126D: pipe (pipe.c:29) ==1350159== by 0x18ADE07D: ??? ==1350159== by 0x140844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1350159== by 0x105A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1350159== by 0x1053DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1350159== by 0xF232D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1350159== by 0xE803153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1350159== by 0xE8031A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1350159== by 0x13578E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1350159== by 0x130383: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1350159== by 0x132FA4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1350159== by 0x132E44: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1350159== by 0x1334DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1350159== by 0x12E775: main (TestOnLatticeSimulationWithPdes.cpp:19) ==1350159== ==1350159== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1350159== at 0xECA5C0C: __open_nocancel (open64_nocancel.c:39) ==1350159== by 0xEC29BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1350159== by 0xE837822: ??? ==1350159== by 0xE83796F: ??? ==1350159== by 0x141296DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1350159== by 0x14129938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1350159== by 0x140DF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1350159== by 0x140842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1350159== by 0x105A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1350159== by 0x1053DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1350159== by 0xF232D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1350159== by 0xE803153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1350159== by 0xE8031A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1350159== by 0x13578E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1350159== by 0x130383: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1350159== by 0x132FA4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1350159== by 0x132E44: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1350159== by 0x1334DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1350159== by 0x12E775: main (TestOnLatticeSimulationWithPdes.cpp:19) ==1350159== ==1350159== Open file descriptor 119: ==1350159== ==1350159== ==1350159== Open file descriptor 115: ==1350159== ==1350159== ==1350159== Open file descriptor 114: /etc/ssl/certs/ca-certificates.crt ==1350159== ==1350159== ==1350159== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt ==1350159== ==1350159== ==1350159== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1350159== ==1350159== ==1350159== ==1350159== HEAP SUMMARY: ==1350159== in use at exit: 857,961 bytes in 12,109 blocks ==1350159== total heap usage: 1,906,514 allocs, 1,894,405 frees, 1,960,986,160 bytes allocated ==1350159== ==1350159== LEAK SUMMARY: ==1350159== definitely lost: 0 bytes in 0 blocks ==1350159== indirectly lost: 0 bytes in 0 blocks ==1350159== possibly lost: 0 bytes in 0 blocks ==1350159== still reachable: 56 bytes in 3 blocks ==1350159== suppressed: 857,905 bytes in 12,106 blocks ==1350159== Reachable blocks (those to which a pointer was found) are not shown. ==1350159== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1350159== ==1350159== For lists of detected and suppressed errors, rerun with: -s ==1350159== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)