==1355655== Memcheck, a memory error detector ==1355655== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1355655== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1355655== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1355655== Parent PID: 1347053 ==1355655== ==1355655== ==1355655== FILE DESCRIPTORS: 10 open (3 std) at exit. ==1355655== Open file descriptor 12: ==1355655== at 0xE81E26D: pipe (pipe.c:29) ==1355655== by 0x18ADF07D: ??? ==1355655== by 0x1407C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1355655== by 0x104BB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1355655== by 0x10454D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1355655== by 0xF14BD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1355655== by 0xE467153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1355655== by 0xE4671A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1355655== by 0x122C8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1355655== by 0x11E4D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1355655== by 0x12078C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1355655== by 0x120687: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1355655== by 0x120C9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1355655== by 0x11CCD5: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==1355655== ==1355655== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1355655== at 0xE822C0C: __open_nocancel (open64_nocancel.c:39) ==1355655== by 0xE7A6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1355655== by 0xE49B822: ??? ==1355655== by 0xE49B96F: ??? ==1355655== by 0x141216DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1355655== by 0x14121938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1355655== by 0x140D7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1355655== by 0x1407C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1355655== by 0x104BB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1355655== by 0x10454D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1355655== by 0xF14BD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1355655== by 0xE467153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1355655== by 0xE4671A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1355655== by 0x122C8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1355655== by 0x11E4D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1355655== by 0x12078C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1355655== by 0x120687: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1355655== by 0x120C9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1355655== by 0x11CCD5: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==1355655== ==1355655== Open file descriptor 119: ==1355655== ==1355655== ==1355655== Open file descriptor 115: ==1355655== ==1355655== ==1355655== Open file descriptor 114: /etc/ssl/certs/ca-certificates.crt ==1355655== ==1355655== ==1355655== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt ==1355655== ==1355655== ==1355655== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1355655== ==1355655== ==1355655== ==1355655== HEAP SUMMARY: ==1355655== in use at exit: 857,961 bytes in 12,109 blocks ==1355655== total heap usage: 5,101,099 allocs, 5,088,990 frees, 1,977,838,840 bytes allocated ==1355655== ==1355655== LEAK SUMMARY: ==1355655== definitely lost: 0 bytes in 0 blocks ==1355655== indirectly lost: 0 bytes in 0 blocks ==1355655== possibly lost: 0 bytes in 0 blocks ==1355655== still reachable: 56 bytes in 3 blocks ==1355655== suppressed: 857,905 bytes in 12,106 blocks ==1355655== Reachable blocks (those to which a pointer was found) are not shown. ==1355655== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1355655== ==1355655== For lists of detected and suppressed errors, rerun with: -s ==1355655== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)