==1373064== Memcheck, a memory error detector ==1373064== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1373064== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1373064== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestColumnDataReaderWriter -malloc_debug -malloc_dump -memory_info ==1373064== Parent PID: 1372843 ==1373064== ==1373064== ==1373064== FILE DESCRIPTORS: 10 open (3 std) at exit. ==1373064== Open file descriptor 12: ==1373064== at 0x61DB26D: pipe (pipe.c:29) ==1373064== by 0xAF1407D: ??? ==1373064== by 0x8A2D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1373064== by 0x5E2A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1373064== by 0x5DC3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1373064== by 0x4A95D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1373064== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1373064== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1373064== by 0x11A4DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1373064== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1373064== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1373064== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1373064== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1373064== by 0x113AF5: main (TestColumnDataReaderWriter.cpp:19) ==1373064== ==1373064== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1373064== at 0x61DFC0C: __open_nocancel (open64_nocancel.c:39) ==1373064== by 0x6163BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1373064== by 0x5D1F822: ??? ==1373064== by 0x5D1F96F: ??? ==1373064== by 0x8AD46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1373064== by 0x8AD4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1373064== by 0x8A8A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1373064== by 0x8A2D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1373064== by 0x5E2A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1373064== by 0x5DC3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1373064== by 0x4A95D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1373064== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1373064== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1373064== by 0x11A4DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1373064== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1373064== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1373064== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1373064== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1373064== by 0x113AF5: main (TestColumnDataReaderWriter.cpp:19) ==1373064== ==1373064== Open file descriptor 119: ==1373064== ==1373064== ==1373064== Open file descriptor 115: ==1373064== ==1373064== ==1373064== Open file descriptor 114: /etc/ssl/certs/ca-certificates.crt ==1373064== ==1373064== ==1373064== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestColumnDataReaderWriter_valgrind.txt ==1373064== ==1373064== ==1373064== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1373064== ==1373064== ==1373064== ==1373064== HEAP SUMMARY: ==1373064== in use at exit: 857,512 bytes in 12,112 blocks ==1373064== total heap usage: 71,041 allocs, 58,929 frees, 1,545,769,782 bytes allocated ==1373064== ==1373064== LEAK SUMMARY: ==1373064== definitely lost: 0 bytes in 0 blocks ==1373064== indirectly lost: 0 bytes in 0 blocks ==1373064== possibly lost: 0 bytes in 0 blocks ==1373064== still reachable: 24 bytes in 2 blocks ==1373064== suppressed: 857,488 bytes in 12,110 blocks ==1373064== Reachable blocks (those to which a pointer was found) are not shown. ==1373064== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1373064== ==1373064== For lists of detected and suppressed errors, rerun with: -s ==1373064== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 20 from 20)