==1381838== Memcheck, a memory error detector ==1381838== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1381838== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1381838== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==1381838== Parent PID: 1372843 ==1381838== ==1381838== ==1381838== FILE DESCRIPTORS: 10 open (3 std) at exit. ==1381838== Open file descriptor 12: ==1381838== at 0x1020826D: pipe (pipe.c:29) ==1381838== by 0x1A7A007D: ??? ==1381838== by 0x1593C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1381838== by 0x11E63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1381838== by 0x11DFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1381838== by 0x10AF3D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1381838== by 0xFD26153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1381838== by 0xFD261A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1381838== by 0x23B2C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1381838== by 0x2317F9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1381838== by 0x235EC6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1381838== by 0x235D66: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1381838== by 0x2363FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1381838== by 0x22FC15: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==1381838== ==1381838== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1381838== at 0x1020CC0C: __open_nocancel (open64_nocancel.c:39) ==1381838== by 0x10190BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1381838== by 0xFD5A822: ??? ==1381838== by 0xFD5A96F: ??? ==1381838== by 0x159E16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1381838== by 0x159E1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1381838== by 0x15997922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1381838== by 0x1593C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1381838== by 0x11E63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1381838== by 0x11DFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1381838== by 0x10AF3D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1381838== by 0xFD26153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1381838== by 0xFD261A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1381838== by 0x23B2C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1381838== by 0x2317F9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1381838== by 0x235EC6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1381838== by 0x235D66: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1381838== by 0x2363FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1381838== by 0x22FC15: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==1381838== ==1381838== Open file descriptor 119: ==1381838== ==1381838== ==1381838== Open file descriptor 115: ==1381838== ==1381838== ==1381838== Open file descriptor 114: /etc/ssl/certs/ca-certificates.crt ==1381838== ==1381838== ==1381838== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==1381838== ==1381838== ==1381838== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1381838== ==1381838== ==1381838== ==1381838== HEAP SUMMARY: ==1381838== in use at exit: 857,977 bytes in 12,109 blocks ==1381838== total heap usage: 6,195,334 allocs, 6,183,225 frees, 2,256,837,674 bytes allocated ==1381838== ==1381838== LEAK SUMMARY: ==1381838== definitely lost: 0 bytes in 0 blocks ==1381838== indirectly lost: 0 bytes in 0 blocks ==1381838== possibly lost: 0 bytes in 0 blocks ==1381838== still reachable: 56 bytes in 3 blocks ==1381838== suppressed: 857,921 bytes in 12,106 blocks ==1381838== Reachable blocks (those to which a pointer was found) are not shown. ==1381838== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1381838== ==1381838== For lists of detected and suppressed errors, rerun with: -s ==1381838== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)