==1381859== Memcheck, a memory error detector ==1381859== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1381859== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1381859== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==1381859== Parent PID: 1372843 ==1381859== ==1381859== ==1381859== FILE DESCRIPTORS: 10 open (3 std) at exit. ==1381859== Open file descriptor 12: ==1381859== at 0x115D626D: pipe (pipe.c:29) ==1381859== by 0x1A79D07D: ??? ==1381859== by 0x158F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1381859== by 0x11223418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1381859== by 0x111BCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1381859== by 0xFEB3D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1381859== by 0xFD26153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1381859== by 0xFD261A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1381859== by 0x2243BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1381859== by 0x21BE39: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1381859== by 0x21F9DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1381859== by 0x21F87C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1381859== by 0x21FF13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1381859== by 0x21A255: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==1381859== ==1381859== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1381859== at 0x115DAC0C: __open_nocancel (open64_nocancel.c:39) ==1381859== by 0x1155EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1381859== by 0xFD5A822: ??? ==1381859== by 0xFD5A96F: ??? ==1381859== by 0x159986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1381859== by 0x15998938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1381859== by 0x1594E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1381859== by 0x158F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1381859== by 0x11223418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1381859== by 0x111BCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1381859== by 0xFEB3D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1381859== by 0xFD26153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1381859== by 0xFD261A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1381859== by 0x2243BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1381859== by 0x21BE39: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1381859== by 0x21F9DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1381859== by 0x21F87C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1381859== by 0x21FF13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1381859== by 0x21A255: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==1381859== ==1381859== Open file descriptor 119: ==1381859== ==1381859== ==1381859== Open file descriptor 115: ==1381859== ==1381859== ==1381859== Open file descriptor 114: /etc/ssl/certs/ca-certificates.crt ==1381859== ==1381859== ==1381859== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==1381859== ==1381859== ==1381859== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1381859== ==1381859== ==1381859== ==1381859== HEAP SUMMARY: ==1381859== in use at exit: 857,977 bytes in 12,109 blocks ==1381859== total heap usage: 3,316,947 allocs, 3,304,838 frees, 1,806,697,347 bytes allocated ==1381859== ==1381859== LEAK SUMMARY: ==1381859== definitely lost: 0 bytes in 0 blocks ==1381859== indirectly lost: 0 bytes in 0 blocks ==1381859== possibly lost: 0 bytes in 0 blocks ==1381859== still reachable: 56 bytes in 3 blocks ==1381859== suppressed: 857,921 bytes in 12,106 blocks ==1381859== Reachable blocks (those to which a pointer was found) are not shown. ==1381859== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1381859== ==1381859== For lists of detected and suppressed errors, rerun with: -s ==1381859== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)