==1541448== Memcheck, a memory error detector ==1541448== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1541448== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1541448== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==1541448== Parent PID: 1523326 ==1541448== ==1541448== Warning: invalid file descriptor -1 in syscall close() ==1541448== ==1541448== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1541448== Open file descriptor 12: ==1541448== at 0xBD7AE8D: pipe (pipe.c:29) ==1541448== by 0x13F9307D: ??? ==1541448== by 0xFC694CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1541448== by 0xB669418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1541448== by 0xB602D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1541448== by 0x9F44D38: PetscInitialize (pinit.c:924) ==1541448== by 0x9DAA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1541448== by 0x9DAA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1541448== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1541448== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1541448== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1541448== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1541448== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1541448== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==1541448== ==1541448== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1541448== at 0xBD7F82C: __open_nocancel (open64_nocancel.c:39) ==1541448== by 0xBD03BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1541448== by 0x9DE4822: ??? ==1541448== by 0x9DE496F: ??? ==1541448== by 0xFD0E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1541448== by 0xFD0E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1541448== by 0xFCC4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1541448== by 0xFC692DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1541448== by 0xB669418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1541448== by 0xB602D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1541448== by 0x9F44D38: PetscInitialize (pinit.c:924) ==1541448== by 0x9DAA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1541448== by 0x9DAA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1541448== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1541448== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1541448== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1541448== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1541448== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1541448== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==1541448== ==1541448== Open file descriptor 116: ==1541448== ==1541448== ==1541448== Open file descriptor 112: ==1541448== ==1541448== ==1541448== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==1541448== ==1541448== ==1541448== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1541448== ==1541448== ==1541448== ==1541448== HEAP SUMMARY: ==1541448== in use at exit: 836,028 bytes in 11,682 blocks ==1541448== total heap usage: 6,626,390 allocs, 6,614,708 frees, 4,220,350,562 bytes allocated ==1541448== ==1541448== LEAK SUMMARY: ==1541448== definitely lost: 0 bytes in 0 blocks ==1541448== indirectly lost: 0 bytes in 0 blocks ==1541448== possibly lost: 0 bytes in 0 blocks ==1541448== still reachable: 24 bytes in 2 blocks ==1541448== suppressed: 836,004 bytes in 11,680 blocks ==1541448== Reachable blocks (those to which a pointer was found) are not shown. ==1541448== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1541448== ==1541448== For lists of detected and suppressed errors, rerun with: -s ==1541448== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 128 from 34)