==1525198== Memcheck, a memory error detector ==1525198== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1525198== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1525198== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==1525198== Parent PID: 1523326 ==1525198== ==1525198== ==1525198== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1525198== Open file descriptor 12: ==1525198== at 0x10151E8D: pipe (pipe.c:29) ==1525198== by 0x18A1A07D: ??? ==1525198== by 0x13F8B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1525198== by 0xF973418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1525198== by 0xF90CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1525198== by 0xE603D38: PetscInitialize (pinit.c:924) ==1525198== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1525198== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1525198== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1525198== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1525198== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1525198== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1525198== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1525198== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==1525198== ==1525198== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1525198== at 0x1015682C: __open_nocancel (open64_nocancel.c:39) ==1525198== by 0x100DABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1525198== by 0xE4A5822: ??? ==1525198== by 0xE4A596F: ??? ==1525198== by 0x140306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1525198== by 0x14030938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1525198== by 0x13FE6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1525198== by 0x13F8B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1525198== by 0xF973418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1525198== by 0xF90CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1525198== by 0xE603D38: PetscInitialize (pinit.c:924) ==1525198== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1525198== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1525198== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1525198== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1525198== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1525198== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1525198== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1525198== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==1525198== ==1525198== Open file descriptor 116: ==1525198== ==1525198== ==1525198== Open file descriptor 112: ==1525198== ==1525198== ==1525198== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==1525198== ==1525198== ==1525198== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1525198== ==1525198== ==1525198== ==1525198== HEAP SUMMARY: ==1525198== in use at exit: 835,633 bytes in 11,677 blocks ==1525198== total heap usage: 862,680 allocs, 851,003 frees, 1,705,765,201 bytes allocated ==1525198== ==1525198== LEAK SUMMARY: ==1525198== definitely lost: 0 bytes in 0 blocks ==1525198== indirectly lost: 0 bytes in 0 blocks ==1525198== possibly lost: 0 bytes in 0 blocks ==1525198== still reachable: 56 bytes in 3 blocks ==1525198== suppressed: 835,577 bytes in 11,674 blocks ==1525198== Reachable blocks (those to which a pointer was found) are not shown. ==1525198== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1525198== ==1525198== For lists of detected and suppressed errors, rerun with: -s ==1525198== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 38 from 38)