==1525323== Memcheck, a memory error detector ==1525323== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1525323== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1525323== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==1525323== Parent PID: 1523326 ==1525323== ==1525323== ==1525323== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1525323== Open file descriptor 12: ==1525323== at 0xEC58E8D: pipe (pipe.c:29) ==1525323== by 0x18A1A07D: ??? ==1525323== by 0x1402B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1525323== by 0x108F9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1525323== by 0x10892D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1525323== by 0xF589D38: PetscInitialize (pinit.c:924) ==1525323== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1525323== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1525323== by 0x13285A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1525323== by 0x12D813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1525323== by 0x12FFCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1525323== by 0x12FEC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1525323== by 0x1304DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1525323== by 0x12C015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==1525323== ==1525323== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1525323== at 0xEC5D82C: __open_nocancel (open64_nocancel.c:39) ==1525323== by 0xEBE1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1525323== by 0xE4A5822: ??? ==1525323== by 0xE4A596F: ??? ==1525323== by 0x140D06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1525323== by 0x140D0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1525323== by 0x14086922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1525323== by 0x1402B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1525323== by 0x108F9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1525323== by 0x10892D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1525323== by 0xF589D38: PetscInitialize (pinit.c:924) ==1525323== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1525323== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1525323== by 0x13285A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1525323== by 0x12D813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1525323== by 0x12FFCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1525323== by 0x12FEC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1525323== by 0x1304DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1525323== by 0x12C015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==1525323== ==1525323== Open file descriptor 116: ==1525323== ==1525323== ==1525323== Open file descriptor 112: ==1525323== ==1525323== ==1525323== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==1525323== ==1525323== ==1525323== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1525323== ==1525323== ==1525323== ==1525323== HEAP SUMMARY: ==1525323== in use at exit: 835,564 bytes in 11,673 blocks ==1525323== total heap usage: 6,684,225 allocs, 6,672,552 frees, 9,197,790,356 bytes allocated ==1525323== ==1525323== LEAK SUMMARY: ==1525323== definitely lost: 0 bytes in 0 blocks ==1525323== indirectly lost: 0 bytes in 0 blocks ==1525323== possibly lost: 0 bytes in 0 blocks ==1525323== still reachable: 56 bytes in 3 blocks ==1525323== suppressed: 835,508 bytes in 11,670 blocks ==1525323== Reachable blocks (those to which a pointer was found) are not shown. ==1525323== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1525323== ==1525323== For lists of detected and suppressed errors, rerun with: -s ==1525323== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)