==1397610== Memcheck, a memory error detector ==1397610== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1397610== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1397610== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==1397610== Parent PID: 1395708 ==1397610== ==1397610== ==1397610== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1397610== Open file descriptor 12: ==1397610== at 0xECE526D: pipe (pipe.c:29) ==1397610== by 0x18ADE07D: ??? ==1397610== by 0x140844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1397610== by 0x105A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1397610== by 0x1053DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1397610== by 0xF232D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1397610== by 0xE803153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1397610== by 0xE8031A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1397610== by 0x226492: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1397610== by 0x21FB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1397610== by 0x223638: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1397610== by 0x2234D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1397610== by 0x223B6F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1397610== by 0x21DF15: main (TestOffLatticeSimulationWithPdes.cpp:19) ==1397610== ==1397610== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1397610== at 0xECE9C0C: __open_nocancel (open64_nocancel.c:39) ==1397610== by 0xEC6DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1397610== by 0xE837822: ??? ==1397610== by 0xE83796F: ??? ==1397610== by 0x141296DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1397610== by 0x14129938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1397610== by 0x140DF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1397610== by 0x140842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1397610== by 0x105A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1397610== by 0x1053DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1397610== by 0xF232D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1397610== by 0xE803153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1397610== by 0xE8031A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1397610== by 0x226492: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1397610== by 0x21FB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1397610== by 0x223638: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1397610== by 0x2234D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1397610== by 0x223B6F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1397610== by 0x21DF15: main (TestOffLatticeSimulationWithPdes.cpp:19) ==1397610== ==1397610== Open file descriptor 117: ==1397610== ==1397610== ==1397610== Open file descriptor 113: ==1397610== ==1397610== ==1397610== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==1397610== ==1397610== ==1397610== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1397610== ==1397610== ==1397610== ==1397610== HEAP SUMMARY: ==1397610== in use at exit: 857,961 bytes in 12,109 blocks ==1397610== total heap usage: 5,973,201 allocs, 5,961,092 frees, 2,782,397,491 bytes allocated ==1397610== ==1397610== LEAK SUMMARY: ==1397610== definitely lost: 0 bytes in 0 blocks ==1397610== indirectly lost: 0 bytes in 0 blocks ==1397610== possibly lost: 0 bytes in 0 blocks ==1397610== still reachable: 56 bytes in 3 blocks ==1397610== suppressed: 857,905 bytes in 12,106 blocks ==1397610== Reachable blocks (those to which a pointer was found) are not shown. ==1397610== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1397610== ==1397610== For lists of detected and suppressed errors, rerun with: -s ==1397610== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)