==1481529== Memcheck, a memory error detector ==1481529== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1481529== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1481529== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==1481529== Parent PID: 1480089 ==1481529== ==1481529== ==1481529== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1481529== Open file descriptor 12: ==1481529== at 0xE69126D: pipe (pipe.c:29) ==1481529== by 0x18AE507D: ??? ==1481529== by 0x12C7A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1481529== by 0xE2DE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1481529== by 0xE277D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1481529== by 0xCF6ED38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1481529== by 0xCDE1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1481529== by 0xCDE11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1481529== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1481529== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1481529== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1481529== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1481529== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1481529== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==1481529== ==1481529== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1481529== at 0xE695C0C: __open_nocancel (open64_nocancel.c:39) ==1481529== by 0xE619BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1481529== by 0xCE15822: ??? ==1481529== by 0xCE1596F: ??? ==1481529== by 0x12D1F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1481529== by 0x12D1F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1481529== by 0x12CD5922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1481529== by 0x12C7A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1481529== by 0xE2DE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1481529== by 0xE277D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1481529== by 0xCF6ED38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1481529== by 0xCDE1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1481529== by 0xCDE11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1481529== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1481529== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1481529== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1481529== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1481529== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1481529== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==1481529== ==1481529== Open file descriptor 117: ==1481529== ==1481529== ==1481529== Open file descriptor 113: ==1481529== ==1481529== ==1481529== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==1481529== ==1481529== ==1481529== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1481529== ==1481529== ==1481529== ==1481529== HEAP SUMMARY: ==1481529== in use at exit: 857,992 bytes in 12,112 blocks ==1481529== total heap usage: 174,219 allocs, 162,107 frees, 1,554,061,376 bytes allocated ==1481529== ==1481529== LEAK SUMMARY: ==1481529== definitely lost: 0 bytes in 0 blocks ==1481529== indirectly lost: 0 bytes in 0 blocks ==1481529== possibly lost: 0 bytes in 0 blocks ==1481529== still reachable: 24 bytes in 2 blocks ==1481529== suppressed: 857,968 bytes in 12,110 blocks ==1481529== Reachable blocks (those to which a pointer was found) are not shown. ==1481529== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1481529== ==1481529== For lists of detected and suppressed errors, rerun with: -s ==1481529== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 26 from 26)