==1480311== Memcheck, a memory error detector ==1480311== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1480311== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1480311== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info ==1480311== Parent PID: 1480089 ==1480311== ==1480311== ==1480311== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1480311== Open file descriptor 12: ==1480311== at 0x645926D: pipe (pipe.c:29) ==1480311== by 0xAF1407D: ??? ==1480311== by 0x8F394CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1480311== by 0x6653418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1480311== by 0x65ECD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1480311== by 0x4A95D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1480311== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1480311== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1480311== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1480311== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1480311== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1480311== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1480311== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1480311== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==1480311== ==1480311== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1480311== at 0x645DC0C: __open_nocancel (open64_nocancel.c:39) ==1480311== by 0x63E1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1480311== by 0x5D1F822: ??? ==1480311== by 0x5D1F96F: ??? ==1480311== by 0x8FDE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1480311== by 0x8FDE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1480311== by 0x8F94922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1480311== by 0x8F392DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1480311== by 0x6653418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1480311== by 0x65ECD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1480311== by 0x4A95D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1480311== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1480311== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1480311== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1480311== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1480311== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1480311== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1480311== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1480311== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==1480311== ==1480311== Open file descriptor 117: ==1480311== ==1480311== ==1480311== Open file descriptor 113: ==1480311== ==1480311== ==1480311== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt ==1480311== ==1480311== ==1480311== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1480311== ==1480311== ==1480311== ==1480311== HEAP SUMMARY: ==1480311== in use at exit: 857,992 bytes in 12,122 blocks ==1480311== total heap usage: 67,638 allocs, 55,516 frees, 1,553,311,757 bytes allocated ==1480311== ==1480311== LEAK SUMMARY: ==1480311== definitely lost: 0 bytes in 0 blocks ==1480311== indirectly lost: 0 bytes in 0 blocks ==1480311== possibly lost: 0 bytes in 0 blocks ==1480311== still reachable: 24 bytes in 2 blocks ==1480311== suppressed: 857,968 bytes in 12,120 blocks ==1480311== Reachable blocks (those to which a pointer was found) are not shown. ==1480311== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1480311== ==1480311== For lists of detected and suppressed errors, rerun with: -s ==1480311== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 27 from 21)