==1491001== Memcheck, a memory error detector ==1491001== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1491001== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1491001== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==1491001== Parent PID: 1480089 ==1491001== ==1491001== Warning: invalid file descriptor -1 in syscall close() ==1491001== ==1491001== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1491001== Open file descriptor 12: ==1491001== at 0xBA2D26D: pipe (pipe.c:29) ==1491001== by 0x1405F07D: ??? ==1491001== by 0xFD094CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1491001== by 0xB662418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1491001== by 0xB5FBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1491001== by 0x9F3DD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1491001== by 0x9DAE153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1491001== by 0x9DAE1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1491001== by 0x14A212: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1491001== by 0x1417ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1491001== by 0x14497C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1491001== by 0x14481C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1491001== by 0x144EB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1491001== by 0x13FBC5: main (TestMonodomainProblem.cpp:19) ==1491001== ==1491001== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1491001== at 0xBA31C0C: __open_nocancel (open64_nocancel.c:39) ==1491001== by 0xB9B5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1491001== by 0x9DE2822: ??? ==1491001== by 0x9DE296F: ??? ==1491001== by 0xFDAE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1491001== by 0xFDAE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1491001== by 0xFD64922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1491001== by 0xFD092DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1491001== by 0xB662418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1491001== by 0xB5FBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1491001== by 0x9F3DD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1491001== by 0x9DAE153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1491001== by 0x9DAE1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1491001== by 0x14A212: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1491001== by 0x1417ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1491001== by 0x14497C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1491001== by 0x14481C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1491001== by 0x144EB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1491001== by 0x13FBC5: main (TestMonodomainProblem.cpp:19) ==1491001== ==1491001== Open file descriptor 117: ==1491001== ==1491001== ==1491001== Open file descriptor 113: ==1491001== ==1491001== ==1491001== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==1491001== ==1491001== ==1491001== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1491001== ==1491001== ==1491001== ==1491001== HEAP SUMMARY: ==1491001== in use at exit: 858,425 bytes in 12,118 blocks ==1491001== total heap usage: 6,271,337 allocs, 6,259,219 frees, 4,206,269,230 bytes allocated ==1491001== ==1491001== LEAK SUMMARY: ==1491001== definitely lost: 0 bytes in 0 blocks ==1491001== indirectly lost: 0 bytes in 0 blocks ==1491001== possibly lost: 0 bytes in 0 blocks ==1491001== still reachable: 24 bytes in 2 blocks ==1491001== suppressed: 858,401 bytes in 12,116 blocks ==1491001== Reachable blocks (those to which a pointer was found) are not shown. ==1491001== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1491001== ==1491001== For lists of detected and suppressed errors, rerun with: -s ==1491001== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 114 from 20)