==1481747== Memcheck, a memory error detector ==1481747== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1481747== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1481747== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithParticles -malloc_debug -malloc_dump -memory_info ==1481747== Parent PID: 1480089 ==1481747== ==1481747== ==1481747== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1481747== Open file descriptor 12: ==1481747== at 0xE94C26D: pipe (pipe.c:29) ==1481747== by 0x18AE507D: ??? ==1481747== by 0x140824CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1481747== by 0x105A9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1481747== by 0x10542D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1481747== by 0xF237D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1481747== by 0xE46C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1481747== by 0xE46C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1481747== by 0x2E2B7A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1481747== by 0x2D93D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1481747== by 0x2DDD40: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1481747== by 0x2DDBE0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1481747== by 0x2DE277: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1481747== by 0x2D77F5: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==1481747== ==1481747== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1481747== at 0xE950C0C: __open_nocancel (open64_nocancel.c:39) ==1481747== by 0xE8D4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1481747== by 0xE4A0822: ??? ==1481747== by 0xE4A096F: ??? ==1481747== by 0x141276DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1481747== by 0x14127938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1481747== by 0x140DD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1481747== by 0x140822DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1481747== by 0x105A9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1481747== by 0x10542D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1481747== by 0xF237D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1481747== by 0xE46C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1481747== by 0xE46C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1481747== by 0x2E2B7A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1481747== by 0x2D93D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1481747== by 0x2DDD40: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1481747== by 0x2DDBE0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1481747== by 0x2DE277: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1481747== by 0x2D77F5: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==1481747== ==1481747== Open file descriptor 117: ==1481747== ==1481747== ==1481747== Open file descriptor 113: ==1481747== ==1481747== ==1481747== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithParticles_valgrind.txt ==1481747== ==1481747== ==1481747== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1481747== ==1481747== ==1481747== ==1481747== HEAP SUMMARY: ==1481747== in use at exit: 858,024 bytes in 12,113 blocks ==1481747== total heap usage: 111,903 allocs, 99,790 frees, 1,550,615,788 bytes allocated ==1481747== ==1481747== LEAK SUMMARY: ==1481747== definitely lost: 0 bytes in 0 blocks ==1481747== indirectly lost: 0 bytes in 0 blocks ==1481747== possibly lost: 0 bytes in 0 blocks ==1481747== still reachable: 56 bytes in 3 blocks ==1481747== suppressed: 857,968 bytes in 12,110 blocks ==1481747== Reachable blocks (those to which a pointer was found) are not shown. ==1481747== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1481747== ==1481747== For lists of detected and suppressed errors, rerun with: -s ==1481747== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)