==1488803== Memcheck, a memory error detector ==1488803== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1488803== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1488803== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningMeshBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1488803== Parent PID: 1480089 ==1488803== ==1488803== ==1488803== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1488803== Open file descriptor 12: ==1488803== at 0xFCD826D: pipe (pipe.c:29) ==1488803== by 0x18AE507D: ??? ==1488803== by 0x1402F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1488803== by 0xF927418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1488803== by 0xF8C0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1488803== by 0xE594D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1488803== by 0xE46C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1488803== by 0xE46C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1488803== by 0x122229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1488803== by 0x11D80D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1488803== by 0x11FD98: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1488803== by 0x11FC38: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1488803== by 0x1202CF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1488803== by 0x11BC35: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==1488803== ==1488803== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1488803== at 0xFCDCC0C: __open_nocancel (open64_nocancel.c:39) ==1488803== by 0xFC60BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1488803== by 0xF81E822: ??? ==1488803== by 0xF81E96F: ??? ==1488803== by 0x140D66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1488803== by 0x140D6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1488803== by 0x1408C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1488803== by 0x1402F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1488803== by 0xF927418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1488803== by 0xF8C0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1488803== by 0xE594D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1488803== by 0xE46C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1488803== by 0xE46C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1488803== by 0x122229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1488803== by 0x11D80D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1488803== by 0x11FD98: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1488803== by 0x11FC38: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1488803== by 0x1202CF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1488803== by 0x11BC35: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==1488803== ==1488803== Open file descriptor 117: ==1488803== ==1488803== ==1488803== Open file descriptor 113: ==1488803== ==1488803== ==1488803== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedSimulationsTutorial_valgrind.txt ==1488803== ==1488803== ==1488803== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1488803== ==1488803== ==1488803== ==1488803== HEAP SUMMARY: ==1488803== in use at exit: 857,961 bytes in 12,109 blocks ==1488803== total heap usage: 3,258,657 allocs, 3,246,548 frees, 2,463,038,441 bytes allocated ==1488803== ==1488803== LEAK SUMMARY: ==1488803== definitely lost: 0 bytes in 0 blocks ==1488803== indirectly lost: 0 bytes in 0 blocks ==1488803== possibly lost: 0 bytes in 0 blocks ==1488803== still reachable: 56 bytes in 3 blocks ==1488803== suppressed: 857,905 bytes in 12,106 blocks ==1488803== Reachable blocks (those to which a pointer was found) are not shown. ==1488803== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1488803== ==1488803== For lists of detected and suppressed errors, rerun with: -s ==1488803== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)