==1488866== Memcheck, a memory error detector ==1488866== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1488866== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1488866== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1488866== Parent PID: 1480089 ==1488866== ==1488866== ==1488866== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1488866== Open file descriptor 12: ==1488866== at 0xE90A26D: pipe (pipe.c:29) ==1488866== by 0x18AE507D: ??? ==1488866== by 0x140824CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1488866== by 0x105A9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1488866== by 0x10542D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1488866== by 0xF239D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1488866== by 0xE46C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1488866== by 0xE46C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1488866== by 0x12C594: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1488866== by 0x127B6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1488866== by 0x12A1B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1488866== by 0x12A058: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1488866== by 0x12A6EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1488866== by 0x125F95: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==1488866== ==1488866== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1488866== at 0xE90EC0C: __open_nocancel (open64_nocancel.c:39) ==1488866== by 0xE892BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1488866== by 0xE4A0822: ??? ==1488866== by 0xE4A096F: ??? ==1488866== by 0x141276DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1488866== by 0x14127938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1488866== by 0x140DD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1488866== by 0x140822DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1488866== by 0x105A9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1488866== by 0x10542D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1488866== by 0xF239D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1488866== by 0xE46C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1488866== by 0xE46C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1488866== by 0x12C594: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1488866== by 0x127B6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1488866== by 0x12A1B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1488866== by 0x12A058: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1488866== by 0x12A6EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1488866== by 0x125F95: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==1488866== ==1488866== Open file descriptor 117: ==1488866== ==1488866== ==1488866== Open file descriptor 113: ==1488866== ==1488866== ==1488866== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt ==1488866== ==1488866== ==1488866== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1488866== ==1488866== ==1488866== ==1488866== HEAP SUMMARY: ==1488866== in use at exit: 858,024 bytes in 12,113 blocks ==1488866== total heap usage: 647,754 allocs, 635,641 frees, 1,926,392,286 bytes allocated ==1488866== ==1488866== LEAK SUMMARY: ==1488866== definitely lost: 0 bytes in 0 blocks ==1488866== indirectly lost: 0 bytes in 0 blocks ==1488866== possibly lost: 0 bytes in 0 blocks ==1488866== still reachable: 56 bytes in 3 blocks ==1488866== suppressed: 857,968 bytes in 12,110 blocks ==1488866== Reachable blocks (those to which a pointer was found) are not shown. ==1488866== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1488866== ==1488866== For lists of detected and suppressed errors, rerun with: -s ==1488866== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)