==1488889== Memcheck, a memory error detector ==1488889== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1488889== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1488889== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1488889== Parent PID: 1480089 ==1488889== ==1488889== ==1488889== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1488889== Open file descriptor 12: ==1488889== at 0xEBBF26D: pipe (pipe.c:29) ==1488889== by 0x18AE307D: ??? ==1488889== by 0x140844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1488889== by 0x104C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1488889== by 0x10459D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1488889== by 0xF150D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1488889== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1488889== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1488889== by 0x11C9B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1488889== by 0x1182D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1488889== by 0x11A55A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1488889== by 0x11A455: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1488889== by 0x11AA69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1488889== by 0x116AD5: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==1488889== ==1488889== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1488889== at 0xEBC3C0C: __open_nocancel (open64_nocancel.c:39) ==1488889== by 0xEB47BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1488889== by 0xE83C822: ??? ==1488889== by 0xE83C96F: ??? ==1488889== by 0x141296DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1488889== by 0x14129938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1488889== by 0x140DF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1488889== by 0x140842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1488889== by 0x104C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1488889== by 0x10459D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1488889== by 0xF150D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==1488889== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1488889== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1488889== by 0x11C9B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1488889== by 0x1182D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1488889== by 0x11A55A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1488889== by 0x11A455: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1488889== by 0x11AA69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1488889== by 0x116AD5: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==1488889== ==1488889== Open file descriptor 117: ==1488889== ==1488889== ==1488889== Open file descriptor 113: ==1488889== ==1488889== ==1488889== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==1488889== ==1488889== ==1488889== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1488889== ==1488889== ==1488889== ==1488889== HEAP SUMMARY: ==1488889== in use at exit: 857,961 bytes in 12,109 blocks ==1488889== total heap usage: 1,817,880 allocs, 1,805,771 frees, 1,867,331,203 bytes allocated ==1488889== ==1488889== LEAK SUMMARY: ==1488889== definitely lost: 0 bytes in 0 blocks ==1488889== indirectly lost: 0 bytes in 0 blocks ==1488889== possibly lost: 0 bytes in 0 blocks ==1488889== still reachable: 56 bytes in 3 blocks ==1488889== suppressed: 857,905 bytes in 12,106 blocks ==1488889== Reachable blocks (those to which a pointer was found) are not shown. ==1488889== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1488889== ==1488889== For lists of detected and suppressed errors, rerun with: -s ==1488889== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)