==1797157== Memcheck, a memory error detector ==1797157== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1797157== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1797157== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1797157== Parent PID: 1781628 ==1797157== ==1797157== ==1797157== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1797157== Open file descriptor 12: ==1797157== at 0x1011607D: pipe (pipe.c:29) ==1797157== by 0x18A2207D: ??? ==1797157== by 0x13F934CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1797157== by 0xF937418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1797157== by 0xF8D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1797157== by 0xE599D38: PetscInitialize (pinit.c:924) ==1797157== by 0xE471153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1797157== by 0xE4711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1797157== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1797157== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1797157== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1797157== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1797157== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1797157== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==1797157== ==1797157== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1797157== at 0x1011AA1C: __open_nocancel (open64_nocancel.c:39) ==1797157== by 0x1009EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1797157== by 0xF829822: ??? ==1797157== by 0xF82996F: ??? ==1797157== by 0x1403A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1797157== by 0x1403A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1797157== by 0x13FF0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1797157== by 0x13F932DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1797157== by 0xF937418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1797157== by 0xF8D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1797157== by 0xE599D38: PetscInitialize (pinit.c:924) ==1797157== by 0xE471153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1797157== by 0xE4711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1797157== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1797157== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1797157== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1797157== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1797157== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1797157== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==1797157== ==1797157== Open file descriptor 116: ==1797157== ==1797157== ==1797157== Open file descriptor 112: ==1797157== ==1797157== ==1797157== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==1797157== ==1797157== ==1797157== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1797157== ==1797157== ==1797157== ==1797157== HEAP SUMMARY: ==1797157== in use at exit: 835,564 bytes in 11,673 blocks ==1797157== total heap usage: 1,407,213 allocs, 1,395,540 frees, 1,600,237,173 bytes allocated ==1797157== ==1797157== LEAK SUMMARY: ==1797157== definitely lost: 0 bytes in 0 blocks ==1797157== indirectly lost: 0 bytes in 0 blocks ==1797157== possibly lost: 0 bytes in 0 blocks ==1797157== still reachable: 56 bytes in 3 blocks ==1797157== suppressed: 835,508 bytes in 11,670 blocks ==1797157== Reachable blocks (those to which a pointer was found) are not shown. ==1797157== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1797157== ==1797157== For lists of detected and suppressed errors, rerun with: -s ==1797157== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)