==1783147== Memcheck, a memory error detector ==1783147== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1783147== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1783147== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==1783147== Parent PID: 1781628 ==1783147== ==1783147== ==1783147== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1783147== Open file descriptor 12: ==1783147== at 0xD25C07D: pipe (pipe.c:29) ==1783147== by 0x18A2207D: ??? ==1783147== by 0x13FEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1783147== by 0x104D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1783147== by 0x1046BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1783147== by 0xF162D38: PetscInitialize (pinit.c:924) ==1783147== by 0xCE58153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1783147== by 0xCE581A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1783147== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1783147== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1783147== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1783147== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1783147== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1783147== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==1783147== ==1783147== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1783147== at 0xD260A1C: __open_nocancel (open64_nocancel.c:39) ==1783147== by 0xD1E4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1783147== by 0xCE92822: ??? ==1783147== by 0xCE9296F: ??? ==1783147== by 0x1408F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1783147== by 0x1408F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1783147== by 0x14045922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1783147== by 0x13FEA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1783147== by 0x104D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1783147== by 0x1046BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1783147== by 0xF162D38: PetscInitialize (pinit.c:924) ==1783147== by 0xCE58153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1783147== by 0xCE581A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1783147== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1783147== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1783147== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1783147== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1783147== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1783147== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==1783147== ==1783147== Open file descriptor 116: ==1783147== ==1783147== ==1783147== Open file descriptor 112: ==1783147== ==1783147== ==1783147== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==1783147== ==1783147== ==1783147== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1783147== ==1783147== ==1783147== ==1783147== HEAP SUMMARY: ==1783147== in use at exit: 835,601 bytes in 11,676 blocks ==1783147== total heap usage: 66,268 allocs, 54,592 frees, 1,541,008,043 bytes allocated ==1783147== ==1783147== LEAK SUMMARY: ==1783147== definitely lost: 0 bytes in 0 blocks ==1783147== indirectly lost: 0 bytes in 0 blocks ==1783147== possibly lost: 0 bytes in 0 blocks ==1783147== still reachable: 24 bytes in 2 blocks ==1783147== suppressed: 835,577 bytes in 11,674 blocks ==1783147== Reachable blocks (those to which a pointer was found) are not shown. ==1783147== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1783147== ==1783147== For lists of detected and suppressed errors, rerun with: -s ==1783147== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)