==943660== Memcheck, a memory error detector ==943660== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==943660== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==943660== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==943660== Parent PID: 941643 ==943660== ==943660== ==943660== FILE DESCRIPTORS: 9 open (3 std) at exit. ==943660== Open file descriptor 12: ==943660== at 0xEC5107D: pipe (pipe.c:29) ==943660== by 0x18A1D07D: ??? ==943660== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==943660== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==943660== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==943660== by 0xF582D38: PetscInitialize (pinit.c:924) ==943660== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==943660== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==943660== by 0x13285A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==943660== by 0x12D813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==943660== by 0x12FFCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==943660== by 0x12FEC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==943660== by 0x1304DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==943660== by 0x12C015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==943660== ==943660== Open file descriptor 8: /dev/shm/open_mpi.0000 ==943660== at 0xEC55A1C: __open_nocancel (open64_nocancel.c:39) ==943660== by 0xEBD9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==943660== by 0xE49F822: ??? ==943660== by 0xE49F96F: ??? ==943660== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==943660== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==943660== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==943660== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==943660== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==943660== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==943660== by 0xF582D38: PetscInitialize (pinit.c:924) ==943660== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==943660== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==943660== by 0x13285A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==943660== by 0x12D813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==943660== by 0x12FFCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==943660== by 0x12FEC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==943660== by 0x1304DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==943660== by 0x12C015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==943660== ==943660== Open file descriptor 115: ==943660== ==943660== ==943660== Open file descriptor 110: ==943660== ==943660== ==943660== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==943660== ==943660== ==943660== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==943660== ==943660== ==943660== ==943660== HEAP SUMMARY: ==943660== in use at exit: 995,524 bytes in 13,910 blocks ==943660== total heap usage: 6,688,506 allocs, 6,674,596 frees, 9,229,125,063 bytes allocated ==943660== ==943660== LEAK SUMMARY: ==943660== definitely lost: 0 bytes in 0 blocks ==943660== indirectly lost: 0 bytes in 0 blocks ==943660== possibly lost: 0 bytes in 0 blocks ==943660== still reachable: 56 bytes in 3 blocks ==943660== suppressed: 995,468 bytes in 13,907 blocks ==943660== Reachable blocks (those to which a pointer was found) are not shown. ==943660== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==943660== ==943660== For lists of detected and suppressed errors, rerun with: -s ==943660== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)